Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i08r
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   3.5  
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   6.1  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    26   6.1  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    25   8.0  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 403 QNIDIHVYNNCI*NLNHEY*RKCQAYSTK 317
           Q +  H+YN C+ + N  Y R+C + S K
Sbjct: 539 QKLSNHLYNLCVKSSNVNYARECISLSIK 567


>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 289

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -3

Query: 637 NYFINIRLQTSQILQIIENFNYFYTIIHAS*TKM-CFSLWWNHFICEY 497
           ++ I   + TS  L+   ++  +  I   S  K   F+ +W H IC Y
Sbjct: 196 SFNIKAEIDTSSFLETQRSYRIYMLIDCPSNPKATAFARYWMHLICSY 243


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 181 NNSFLSHMRCIRVHKNSVLNYYIEQANYY 95
           NNS++ H +  R H+N +    I+ A  Y
Sbjct: 577 NNSYMDHQKSYRYHQNGLAREVIKIAATY 605


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 225 YPLKHMFYESDIWKIIIHS*AICGVSG 145
           Y L+ + +E DIW  ++     CG  G
Sbjct: 299 YKLQEILFEMDIWNSLLQEAQSCGNQG 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,815,643
Number of Sequences: 5004
Number of extensions: 57152
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)