Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i08r
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42261| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_7694| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-28)                  30   2.1  
SB_28367| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07)                   29   4.9  
SB_6520| Best HMM Match : MANEC (HMM E-Value=2.2e-12)                  28   8.5  

>SB_42261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 480

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/47 (25%), Positives = 28/47 (59%)
 Frame = +2

Query: 266 NAKFSIYNTYYYYINLVLCTISLAFSLVFMIQVSNTVIIDMNVYVLI 406
           +A+F     ++Y++ +    I +A  L+F+ +V N + I+ NV +++
Sbjct: 232 DARFGSRFDFFYFVTITSWLIIIAVFLLFLFKVYNRLSINWNVVLVV 278


>SB_7694| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-28)
          Length = 329

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = +2

Query: 299 YYINLVLCTISLAFSLVFMIQVSNTVIIDMNVYVLISLYYFI*KYLHTR--KKIAIS*GM 472
           YY+  + CT+S+AF ++     S   ++ +     +++  F+  YLH R    + +    
Sbjct: 93  YYLPDIYCTVSIAFGVI----SSFVGVVSLVSITAVAVDRFLAIYLHLRYLSVVTMKRAF 148

Query: 473 AVCIT-WVF 496
            VC+  WVF
Sbjct: 149 VVCVAFWVF 157


>SB_28367| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +2

Query: 290 TYYYYINLVL-CT-ISLAFSLVFMIQVSNTVIIDMNVYVLISLYYF 421
           TYYY +NL+L CT I+    L F++   +   + + + +L+S+  F
Sbjct: 89  TYYYVMNLILPCTLIACTIFLEFILPAESGERVGLGITILLSMAVF 134


>SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07)
          Length = 2008

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 334  GIFFSIHDSSFKYSYYRHECLCFDFTVLFYLKIFTHT 444
            GI +S+  + F Y Y     +C  FTVL + K+  HT
Sbjct: 1814 GILWSLVTAPFHYIYK----ICLKFTVLLFSKLIAHT 1846


>SB_6520| Best HMM Match : MANEC (HMM E-Value=2.2e-12)
          Length = 452

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
 Frame = -3

Query: 622 IRLQTSQILQIIENFN----YFYTIIHAS*TKMCFSLWWNHFICEYEHPSYTNCHTS--- 464
           I+++ +QIL+  E  N    Y    + ++  + C++L   H  C     SYTN  +    
Sbjct: 41  IQVKKNQILRTKEALNNGAKYLKRAVIST-ARECYNLCCRHSSCNLAMISYTNSTSGSDA 99

Query: 463 -RYCYFFTC 440
            R CY F C
Sbjct: 100 VRMCYLFDC 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,180,793
Number of Sequences: 59808
Number of extensions: 361106
Number of successful extensions: 593
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)