Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i08r
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.8  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   6.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   6.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.7  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 199 IRYLENNNSFLSHMRCIRVHKNSVLNYYIEQANYYFCIV 83
           I  +  NN  L  +  I++ K    N Y  Q N Y  IV
Sbjct: 338 IEIVAKNNDTLQFISGIKIIKQISSNIYERQNNEYIWIV 376


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -3

Query: 523 WWNHFICEYEHPSYT--NCHTSRYC 455
           W +HF C Y + S T  N + +++C
Sbjct: 430 WEHHFQCRYPNASVTPYNKNYTKFC 454


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 248 VSILIPNAKFSIYNTYYYYIN 310
           +S L  N K+S YN Y  Y N
Sbjct: 315 ISSLSNNYKYSNYNNYNNYNN 335


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 121 NLIQNFCVP*YTAYGSGMN 177
           NL++   +P +T+Y SG+N
Sbjct: 432 NLLEKNWLPVHTSYKSGLN 450


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -3

Query: 511 FICEYEHPSYTNCHTSRYCYFFTC 440
           F+C YE   +  CH    C F  C
Sbjct: 735 FLCRYEAHCFALCHC---CDFDAC 755


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,902
Number of Sequences: 438
Number of extensions: 4142
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)