Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i08f
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    28   1.2  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    27   1.6  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    27   2.1  
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce...    27   2.8  
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ...    27   2.8  
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    27   2.8  
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    25   8.5  

>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 463 YYYKSTLKDEKYYIKTYAFTLQDLKNLRNSTLL 561
           Y+Y+   K+++  ++ YA  L  + NLR S+ L
Sbjct: 346 YFYEEQKKNDEANVRVYADALAHIYNLRKSSFL 378


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +2

Query: 59  WLCCLTI*MRLICWTI*RKVSKKTSKPKISQRMLTYLLCSDVNLRKPHTF 208
           W  C    M  ICW +  +V  K+    +S+ ML        N R  +TF
Sbjct: 608 WRDCGHCKMAEICWNLANRVYSKSGWESLSEHMLDLKPTLSENFRVKNTF 657


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +1

Query: 382 GVPNSSEMSHNKQSQYKETTLQNNLSWYYYKSTLKDEKYYIKTYAFTLQDLKNLRNSTLL 561
           G  N  E +  K   Y   +L ++  WY Y +      Y+I + +   +D  +LR++TL+
Sbjct: 133 GSSNDFENNVAKAIAYYWRSLTHDSLWYGYTNRPSIPFYFIPSISAAQKDRVHLRSNTLI 192


>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +1

Query: 442 LQNNLSWYYYKSTLKDEKYYIKTYAFTLQDLKNLRNSTLLIP 567
           L  N+SW  +  +    +Y+++     ++DL NL    L +P
Sbjct: 35  LHENVSWISWFCSRPGREYFVEVKEDFIEDLFNLTGLNLAVP 76


>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 406 SHNKQSQYKETTLQNNLSWYYYKSTLKDEKYYIKTYAFTLQDL 534
           SH K+ +  E  +QN  S    KS+L D K YI   +  L D+
Sbjct: 198 SHPKEREVDEEYIQNFSSDPSLKSSLNDLKRYISDSSSELADV 240


>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 353 VIDKAGLLPSEYQTRVKCRTINKANTKR 436
           +IDK   LPSEY +RVK   +++  T+R
Sbjct: 159 IIDK---LPSEYDSRVKAMEVDEKPTER 183


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 277 DKPEFWFYYTTTMCPKHVYLLNLFVCHRQSGT 372
           +K E   Y+TT +C KH  L +L +     GT
Sbjct: 121 EKTEKIQYWTTLLCTKHSQLFDLVLTLGGDGT 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,430,022
Number of Sequences: 5004
Number of extensions: 51116
Number of successful extensions: 110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)