Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i08f
         (599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336...    29   2.2  
05_01_0322 - 2538320-2538742,2539349-2539521,2539764-2539854,254...    28   6.6  

>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
            3366324-3366449,3367056-3367262,3367399-3367492,
            3367575-3367621,3367705-3368157,3368261-3368560,
            3368656-3369114,3369189-3369410,3369659-3369890,
            3370051-3370422,3371210-3371322,3371682-3371903,
            3371977-3372180,3372308-3372572,3373123-3373311,
            3373441-3373768,3373843-3374248,3374339-3374648,
            3375677-3375837,3376825-3376998,3377265-3377609,
            3377713-3377754,3378585-3378734,3378847-3379002,
            3379088-3379540,3379651-3379966,3380402-3380839,
            3381475-3381697,3383538-3383852,3384033-3384095,
            3384699-3384903,3385362-3385425,3386014-3386204
          Length = 3048

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 24/63 (38%), Positives = 30/63 (47%)
 Frame = -2

Query: 556  MYYFLSFLSLGE*KHKF*CNIFHLSMYSCNNTRTNYFEELSLCIGFVYCATFHSSLVLRG 377
            ++Y  S LSL    H +  N  H++    N  R N  E LS C  FV CA  H  +VLR 
Sbjct: 2932 VFYSDSDLSL----HMYSINGKHIASSEANG-RLNCME-LSCCGEFVVCAGDHGQIVLRS 2985

Query: 376  QKS 368
              S
Sbjct: 2986 MHS 2988


>05_01_0322 -
           2538320-2538742,2539349-2539521,2539764-2539854,
           2540005-2540121,2540327-2540392,2540933-2541025,
           2541661-2541721,2542634-2542707,2542782-2542848,
           2543342-2543400
          Length = 407

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 448 NNLSWYYYKSTLKDEKYYIKTYAFTLQDLKNLRNSTL 558
           + +S Y + S L+D K  +KT  F L+    L++S +
Sbjct: 181 DKISMYLFASDLRDAKKSLKTSGFVLRSKVTLKSSVI 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,356,115
Number of Sequences: 37544
Number of extensions: 280013
Number of successful extensions: 515
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)