Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i08f
         (599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18592| Best HMM Match : DUF1298 (HMM E-Value=0.85)                  29   2.2  
SB_10104| Best HMM Match : DUF1298 (HMM E-Value=0.85)                  29   2.2  
SB_770| Best HMM Match : DUF837 (HMM E-Value=1.4)                      29   3.8  
SB_22476| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)               28   6.6  
SB_50133| Best HMM Match : Ank (HMM E-Value=0)                         27   8.8  
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)                   27   8.8  

>SB_18592| Best HMM Match : DUF1298 (HMM E-Value=0.85)
          Length = 282

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 352 CHRQSGTFALGVPNSSEMSHNKQSQYKETTLQNNLSW 462
           CHR   +   G+ + SEM+ NK +Q     + ++LSW
Sbjct: 196 CHRDITSAFWGICSGSEMAKNKHAQRIMDRILSDLSW 232


>SB_10104| Best HMM Match : DUF1298 (HMM E-Value=0.85)
          Length = 282

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 352 CHRQSGTFALGVPNSSEMSHNKQSQYKETTLQNNLSW 462
           CHR   +   G+ + SEM+ NK +Q     + ++LSW
Sbjct: 196 CHRDITSAFWGICSGSEMAKNKHAQRIMDRILSDLSW 232


>SB_770| Best HMM Match : DUF837 (HMM E-Value=1.4)
          Length = 269

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +1

Query: 400 EMSHNKQSQYKETTLQNNLSWYYYKSTLKDEKYYIKTYAFTLQDLKNLRNST 555
           E+   K+SQ +    Q  L  +    TL+DE +Y++ Y   +Q+L+ + N++
Sbjct: 51  EIVRMKESQREVEEEQEKL--FKDIETLEDENFYLRKYVDKIQELEEMTNTS 100


>SB_22476| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
          Length = 269

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 298 YYTTTMCPKHVYLLNLFVCHRQSG 369
           YYT TMC KH Y     +C + +G
Sbjct: 129 YYTQTMCTKHAYYTQT-MCTKHAG 151


>SB_50133| Best HMM Match : Ank (HMM E-Value=0)
          Length = 551

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 350 CVIDKAGLLPSE-YQTRVKCRTINK 421
           C+  K  L P E YQ RV+C+TIN+
Sbjct: 292 CIYKKKLLPPIEAYQNRVECQTINE 316


>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
          Length = 2200

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
 Frame = +1

Query: 391  NSSEMSHNKQSQYKETTLQN-NLSWYYYKS-TLKDEKYYIKTYAFTLQDLKNLRNSTLLI 564
            N+SE   N   Q K  T++   +   +YK+ T+K +KY IK   F L  LK  +N+T++I
Sbjct: 972  NTSEKIKNMTIQAKNMTIKAIAIGKVFYKNMTIKAQKYVIKIKQFAL-ILK--KNATVMI 1028


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,595,494
Number of Sequences: 59808
Number of extensions: 365271
Number of successful extensions: 882
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)