Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i08f
         (599 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB065958-1|BAC06171.1|  311|Homo sapiens seven transmembrane hel...    35   0.19 
AL606804-8|CAI17152.1|  308|Homo sapiens olfactory receptor, fam...    30   5.4  
AB065440-1|BAC05707.1|  308|Homo sapiens seven transmembrane hel...    30   5.4  

>AB065958-1|BAC06171.1|  311|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 311

 Score = 35.1 bits (77), Expect = 0.19
 Identities = 18/61 (29%), Positives = 33/61 (54%)
 Frame = -3

Query: 504 DVIFFIFQCTLVIIPGQIILKSCLFVLALFIVRHFTRVWYSEGKSPALSMTHKQIQQVNM 325
           +++  IF    +++P   IL S +F++A  +     R+ Y+EG+S A S     I  V++
Sbjct: 196 ELLILIFSGINILVPSLTILSSYIFIIASIL-----RIRYTEGRSKAFSTCSSHISAVSV 250

Query: 324 F 322
           F
Sbjct: 251 F 251


>AL606804-8|CAI17152.1|  308|Homo sapiens olfactory receptor, family
           5, subfamily AV, member 1 pseudogene protein.
          Length = 308

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
 Frame = -3

Query: 555 CTIS*VF*VLESKSISFDVIFFIFQCTLVIIPGQIILKSCLFVLALFIVRHFTRVWYSEG 376
           C I  +  +L+ K I+ ++   +F  +LVII   +I  S +++ ++ +     R+   EG
Sbjct: 180 CNIPQLLSLLDPKVITIEIGVMVFGTSLVIISFVVITLSYMYIFSVIM-----RIPSKEG 234

Query: 375 KSPALSMTHKQIQQVNMFR-THSCGVVKP 292
           +S   S     +  V +F  + S   VKP
Sbjct: 235 RSKTFSTCIPHLVVVTLFMISGSIAYVKP 263


>AB065440-1|BAC05707.1|  308|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 308

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
 Frame = -3

Query: 555 CTIS*VF*VLESKSISFDVIFFIFQCTLVIIPGQIILKSCLFVLALFIVRHFTRVWYSEG 376
           C I  +  +L+ K I+ ++   +F  +LVII   +I  S +++ ++ +     R+   EG
Sbjct: 180 CNIPQLLSLLDPKVITIEIGVMVFGTSLVIISFVVITLSYMYIFSVIM-----RIPSKEG 234

Query: 375 KSPALSMTHKQIQQVNMFR-THSCGVVKP 292
           +S   S     +  V +F  + S   VKP
Sbjct: 235 RSKTFSTCIPHLVVVTLFMISGSIAYVKP 263


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,080,227
Number of Sequences: 237096
Number of extensions: 1730881
Number of successful extensions: 3032
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3032
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)