Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i08f
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006677-1|AAF39948.1|  331|Caenorhabditis elegans Serpentine re...    31   0.83 
Z83123-13|CAB05615.2| 1208|Caenorhabditis elegans Hypothetical p...    29   2.5  
Z70680-10|CAA94577.2| 1208|Caenorhabditis elegans Hypothetical p...    29   2.5  
U50300-1|AAC48108.2|  349|Caenorhabditis elegans Serpentine rece...    29   3.3  
AC024799-1|AAK72316.1|  349|Caenorhabditis elegans Serpentine re...    28   4.4  
Z68009-3|CAA92005.1|  817|Caenorhabditis elegans Hypothetical pr...    27   7.7  
X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...    27   7.7  
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...    27   7.7  
AF125442-4|AAD12794.1|  317|Caenorhabditis elegans Serpentine re...    27   7.7  

>AC006677-1|AAF39948.1|  331|Caenorhabditis elegans Serpentine
           receptor, class x protein26 protein.
          Length = 331

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 269 TEKISQNFGFTTPQLCVLNMFTC*ICLCVIDKAGLLPSEY 388
           TE +  +FG  T  L V N+  C +CL  +    L PS +
Sbjct: 32  TESMKNSFGIITKNLAVCNIGMCGLCLFFLFPMQLAPSSF 71


>Z83123-13|CAB05615.2| 1208|Caenorhabditis elegans Hypothetical
           protein C25G4.10 protein.
          Length = 1208

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 436 TTLQNNLSWYYYKSTLKDEKYYIKTYAFTLQDLKNLRNSTLL 561
           TTL+ N +W   +   KD  YY+  Y    +D +  R+S+++
Sbjct: 656 TTLRTNQTWVVMRDLRKDALYYV--YVTAKEDNRTSRSSSII 695


>Z70680-10|CAA94577.2| 1208|Caenorhabditis elegans Hypothetical
           protein C25G4.10 protein.
          Length = 1208

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 436 TTLQNNLSWYYYKSTLKDEKYYIKTYAFTLQDLKNLRNSTLL 561
           TTL+ N +W   +   KD  YY+  Y    +D +  R+S+++
Sbjct: 656 TTLRTNQTWVVMRDLRKDALYYV--YVTAKEDNRTSRSSSII 695


>U50300-1|AAC48108.2|  349|Caenorhabditis elegans Serpentine
           receptor, class x protein3 protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -3

Query: 183 TSEHSRYVSILWLIFGFEVFFDTFLYIVQHMRRIYIVKQQSHRLLFT 43
           T + S++  +    F F  +F+TF  IV  + R  ++  Q H +  T
Sbjct: 78  TEKKSKWTLVFGSAFLFFWYFETFTQIVMALNRYLVICLQKHHIFTT 124


>AC024799-1|AAK72316.1|  349|Caenorhabditis elegans Serpentine
           receptor, class x protein4 protein.
          Length = 349

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 144 IFGFEVFFDTFLYIVQHMRRIYIVKQQSHRLLFTF 40
           IF F  +F+T L +V  + R  I+  Q H+ +FTF
Sbjct: 91  IFLFLWYFETILQVVMGLNRYVIICLQKHK-IFTF 124


>Z68009-3|CAA92005.1|  817|Caenorhabditis elegans Hypothetical
           protein R09A8.3 protein.
          Length = 817

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 442 ELSLCIGFVYCATFHSSLVLRGQKSRFVYD 353
           +LS CIG    A FH+   L G+  +F+ D
Sbjct: 234 QLSNCIGIRRQANFHNDTFLMGKVDQFIVD 263


>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 145 KPENAYISTMFRCQSTEATHLCIMDADLKLNNENNYDI 258
           K EN  I     C+S E THL      L LN++N Y++
Sbjct: 146 KGENKLIKKEITCKSDELTHL----YTLILNSDNTYEV 179


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 145 KPENAYISTMFRCQSTEATHLCIMDADLKLNNENNYDI 258
           K EN  I     C+S E THL      L LN++N Y++
Sbjct: 146 KGENKLIKKEITCKSDELTHL----YTLILNSDNTYEV 179


>AF125442-4|AAD12794.1|  317|Caenorhabditis elegans Serpentine
           receptor, class v protein21 protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 136 LRSLLRYFPLYRPTYETHLYRQTAKPSLVIYFLLIP 29
           L ++ RYF + RPT  + L+ Q+ KP  V+     P
Sbjct: 119 LMTVQRYFIIGRPTDRSTLFMQSLKPWKVVLIYWFP 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,362,914
Number of Sequences: 27780
Number of extensions: 286290
Number of successful extensions: 783
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)