Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i08f
         (599 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03460.1 68415.m00304 kelch repeat-containing protein contain...    28   5.4  
At1g17680.2 68414.m02189 transcription factor-related low simila...    28   5.4  
At1g17680.1 68414.m02188 transcription factor-related low simila...    28   5.4  

>At2g03460.1 68415.m00304 kelch repeat-containing protein contains
           Pfam profile PF01344: Kelch motif
          Length = 333

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -3

Query: 444 KSCLFVLALFIVRHFTRVWYSEGKSPALSMTHKQIQQ 334
           +SCL+V + F  RH    W++  + P  ++T+  I++
Sbjct: 33  ESCLYVCSRFQDRHTNTTWFTLCRKPDQTLTNGTIKK 69


>At1g17680.2 68414.m02189 transcription factor-related low
           similarity to SP|P33339 Transcription factor tau 131 kDa
           subunit (TFIIIC 131 kDa subunit) Saccharomyces
           cerevisiae, transcription factor IIIC102 short isoform
           [Homo sapiens] GI:18481637
          Length = 896

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
 Frame = +1

Query: 283 PEFWFYYTTTMCPKHVYLLNLFVCHRQSGTFALGVPNSSE--MSHNKQSQYKETTLQNNL 456
           P+ WF    ++  +H Y LN + C+  S    LG   S+E    H+ +S+Y++      +
Sbjct: 677 PKQWFDCVRSVIQQHPYRLNAWNCY-YSVISRLGKRASTEAKFMHHLRSKYRDCVPPILI 735

Query: 457 SWYYYKSTLKDE---KYYIKTYAFTLQD-LKNLRNSTLLIPLCI 576
           + +++  T + +   + Y++ Y    +  L NL     LI L +
Sbjct: 736 AGHHFTVTSRHQDAAREYLEAYKLMPESPLINLCVGAALINLAL 779


>At1g17680.1 68414.m02188 transcription factor-related low
           similarity to SP|P33339 Transcription factor tau 131 kDa
           subunit (TFIIIC 131 kDa subunit) Saccharomyces
           cerevisiae, transcription factor IIIC102 short isoform
           [Homo sapiens] GI:18481637
          Length = 896

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
 Frame = +1

Query: 283 PEFWFYYTTTMCPKHVYLLNLFVCHRQSGTFALGVPNSSE--MSHNKQSQYKETTLQNNL 456
           P+ WF    ++  +H Y LN + C+  S    LG   S+E    H+ +S+Y++      +
Sbjct: 677 PKQWFDCVRSVIQQHPYRLNAWNCY-YSVISRLGKRASTEAKFMHHLRSKYRDCVPPILI 735

Query: 457 SWYYYKSTLKDE---KYYIKTYAFTLQD-LKNLRNSTLLIPLCI 576
           + +++  T + +   + Y++ Y    +  L NL     LI L +
Sbjct: 736 AGHHFTVTSRHQDAAREYLEAYKLMPESPLINLCVGAALINLAL 779


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,234,475
Number of Sequences: 28952
Number of extensions: 248340
Number of successful extensions: 590
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)