Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i07r
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   1.9  
SPAC644.18c |bet3||TRAPP complex subunit Bet3 |Schizosaccharomyc...    25   7.8  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = +1

Query: 1    SSDGRNNIELVVVYMVSASSHINIVSSKP*LLMATTRLFI 120
            SSD R+++   ++Y+++   HI  V+++P ++      F+
Sbjct: 2495 SSDNRSDLSKSLIYLLTRDYHIKQVNNRPNVISTLVSSFV 2534


>SPAC644.18c |bet3||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 183

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -1

Query: 208 SKNKISETVYEKLNGEIKKIFV*NCGTLI 122
           SK+KI E VY+K++    ++FV   G+++
Sbjct: 2   SKSKIGEDVYKKVDKVNAELFVLTYGSIV 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,642,638
Number of Sequences: 5004
Number of extensions: 50076
Number of successful extensions: 98
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)