Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i07r
         (697 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY391745-1|AAR28995.1|  460|Anopheles gambiae putative GPCR prot...    25   1.7  
Y17704-1|CAA76824.2|  401|Anopheles gambiae hypothetical protein...    24   5.3  
X98185-1|CAA66860.1|  123|Anopheles gambiae histone H2B protein.       23   7.0  

>AY391745-1|AAR28995.1|  460|Anopheles gambiae putative GPCR
           protein.
          Length = 460

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 149 YFFNFSV*FLVYCFRYFVFRTRIM*RSQRFRNSRL 253
           +  NF + F++YC     FR  ++   +R R SR+
Sbjct: 366 FITNFGINFILYCISGQNFRKAVIEMFRRHRKSRV 400


>Y17704-1|CAA76824.2|  401|Anopheles gambiae hypothetical protein
           protein.
          Length = 401

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 594 YFSQTFFFFLHINEWQHSQISFQ 662
           Y SQ    F+H+  WQ + + F+
Sbjct: 232 YISQPLTVFVHMLRWQLANLEFE 254


>X98185-1|CAA66860.1|  123|Anopheles gambiae histone H2B protein.
          Length = 123

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 620 KKKKCLRKVRTPMFIYR 570
           KKK+  RK  TP++IY+
Sbjct: 26  KKKRKTRKRATPIYIYK 42


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 666,096
Number of Sequences: 2352
Number of extensions: 11779
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70668195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)