Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i07r
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical ...    29   2.4  
U55856-5|AAA98023.1|  441|Caenorhabditis elegans Synaptotagmin p...    28   5.5  
U55856-4|AAK68354.1|  443|Caenorhabditis elegans Synaptotagmin p...    28   5.5  
L15302-1|AAA28145.1|  441|Caenorhabditis elegans synaptotagmin I...    28   5.5  
U23484-5|AAK93844.1|  590|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical
           protein Y41G9A.5 protein.
          Length = 402

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 567 STVYKHGRAYFSQTFFFFLHINEWQHS-QISFQTLICR 677
           S+ Y++ + Y+S  F+ + H   WQ+S Q  +QTL  R
Sbjct: 46  SSQYQNNQNYYSPYFYGYQHQQTWQNSNQNQYQTLYNR 83


>U55856-5|AAA98023.1|  441|Caenorhabditis elegans Synaptotagmin
           protein 1, isoform a protein.
          Length = 441

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -2

Query: 666 MFGTKFDCVAIHLYVEKKKMSEKSTHAHVYIPLIVRTFVCNFIF 535
           M GT    V ++L  EKKK  E   H     P+   TF+    F
Sbjct: 191 MSGTSDPYVKLYLLPEKKKKVETKVHRKTLNPVFNETFIFKVAF 234


>U55856-4|AAK68354.1|  443|Caenorhabditis elegans Synaptotagmin
           protein 1, isoform b protein.
          Length = 443

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -2

Query: 666 MFGTKFDCVAIHLYVEKKKMSEKSTHAHVYIPLIVRTFVCNFIF 535
           M GT    V ++L  EKKK  E   H     P+   TF+    F
Sbjct: 191 MSGTSDPYVKLYLLPEKKKKVETKVHRKTLNPVFNETFIFKVAF 234


>L15302-1|AAA28145.1|  441|Caenorhabditis elegans synaptotagmin I
           protein.
          Length = 441

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -2

Query: 666 MFGTKFDCVAIHLYVEKKKMSEKSTHAHVYIPLIVRTFVCNFIF 535
           M GT    V ++L  EKKK  E   H     P+   TF+    F
Sbjct: 191 MSGTSDPYVKLYLLPEKKKKVETKVHRKTLNPVFNETFIFKVAF 234


>U23484-5|AAK93844.1|  590|Caenorhabditis elegans Hypothetical
           protein EEED8.16 protein.
          Length = 590

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -1

Query: 385 SVIFFCKFNNMVLSVRHHFISFSCKFYYVSSLTIAEGSRLFSST*TTITE 236
           +V F+ +FNN   +      S+ C  ++V  +     + LFSS  T++TE
Sbjct: 210 AVTFYEEFNNCPFN---DLESYCCTLFFVDRIECTTSNDLFSSDDTSLTE 256


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,605,583
Number of Sequences: 27780
Number of extensions: 279698
Number of successful extensions: 637
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)