Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i07r
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g42100.1 68416.m04322 AT hook motif-containing protein-relate...    30   1.3  
At3g13250.1 68416.m01668 hypothetical protein low similarity to ...    29   2.2  
At3g21270.1 68416.m02688 Dof-type zinc finger domain-containing ...    28   5.1  
At1g51790.1 68414.m05836 leucine-rich repeat protein kinase, put...    28   5.1  

>At3g42100.1 68416.m04322 AT hook motif-containing protein-related
            very low similarity to SP|Q9UUA2 DNA repair and
            recombination protein pif1, mitochondrial precursor
            {Schizosaccharomyces pombe}; weak hit to Pfam profile
            PF02178: AT hook motif
          Length = 1752

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +3

Query: 93   INGDDASLYNINVPQF*TNIFLISPFNFSYTVSDILFLEHV*CDARNVSVIVVYVELNSL 272
            I GD + L+ IN P+F     +++P N      +   LEH+  + R      +Y+  +S+
Sbjct: 1519 IYGDPSELHMINDPKFFQRRAILAPTNEDVNTINQYMLEHLKSEER------IYLSADSI 1572

Query: 273  DPS 281
            DP+
Sbjct: 1573 DPT 1575


>At3g13250.1 68416.m01668 hypothetical protein low similarity to
            SP|P07271 DNA repair and recombination protein PIF1,
            mitochondrial precursor {Saccharomyces cerevisiae}
          Length = 1419

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +3

Query: 93   INGDDASLYNINVPQF*TNIFLISPFNFSYTVSDILFLEHV*CDARNVSVIVVYVELNSL 272
            I GD   L+ I+ P+F     +++P N      +   LEH+  + R      +Y+  +S+
Sbjct: 1187 IYGDPTKLHEISDPKFFQRRAILAPKNEDVNTINQYMLEHLDSEER------IYLSADSI 1240

Query: 273  DPS 281
            DPS
Sbjct: 1241 DPS 1243


>At3g21270.1 68416.m02688 Dof-type zinc finger domain-containing
           protein (ADOF2) identical to Dof zinc finger protein
           ADOF2 GI:3608263 from [Arabidopsis thaliana]; identical
           to cDNA adof2 mRNA for Dof zinc finger protein
           GI:3608262; contains Pfam profile PF02701: Dof domain,
           zinc finger
          Length = 204

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
 Frame = -1

Query: 373 FCKFNNMVLSVRHHFISFSCKFYY-----VSSLTIAEGSRLFSST*TTITETLRASHYTC 209
           FC +NN  LS   HF   SC+ Y+     + ++ +  GSR  ++  +T + +  +S    
Sbjct: 41  FCYYNNYNLSQPRHFCK-SCRRYWTKGGALRNVPVGGGSRKNATKRSTSSSSSASSPSNS 99

Query: 208 SKNK 197
           S+NK
Sbjct: 100 SQNK 103


>At1g51790.1 68414.m05836 leucine-rich repeat protein kinase,
           putative smilar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 881

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = -1

Query: 211 CSKNKISETVYEKL-NGEIKKIFV*NCGTLIL*RDASSPLIIMV*NLLYLYVTTRTPCIR 35
           C++      +YE + NG +K+    N  T+    D     + +   L YL+   + P I 
Sbjct: 638 CNEGDKMAVIYEYMANGNLKQHISENSTTVFSWEDRLGIAVDVAQGLEYLHTGCKPPIIH 697

Query: 34  RRVQC 20
           R V+C
Sbjct: 698 RNVKC 702


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,027,869
Number of Sequences: 28952
Number of extensions: 230103
Number of successful extensions: 444
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)