Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i07f
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    25   6.2  
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom...    25   6.2  
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo...    25   8.3  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   8.3  

>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 288 RKQDIGEILQQIMNITDQSLDEAQARKHTLNCHRMKPALFSVLCEI 425
           R +D   IL  I+++ D+ +   Q R+H L C++  P     L E+
Sbjct: 533 RVKDFPSILSTILSV-DEGV--RQHREHMLKCYKNNPVPLEPLVEV 575


>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/71 (21%), Positives = 33/71 (46%)
 Frame = +3

Query: 300 IGEILQQIMNITDQSLDEAQARKHTLNCHRMKPALFSVLCEIKEKTVLSLRNTQEEEPPD 479
           +G +L +I  + +  +D     + +L   R   A        KEK + S+ + +  +P  
Sbjct: 103 LGVLLYEIGELEEHMVDRYDQYRVSLKTIRDIEASVQPTRVKKEKLLNSIYDVRSRDPES 162

Query: 480 PQLMRLDNMLI 512
           P+L+ ++  L+
Sbjct: 163 PKLITMEQELV 173


>SPAC18G6.06 |||U3 snoRNP-associated protein
           Utp11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 288 RKQDIGEILQQIMNITDQSLDEAQARKHTLNCHRMK 395
           + QDIG I     N+    +D  + + HT+  HR K
Sbjct: 96  KTQDIGWIRHH-RNVERAKIDHLEQQMHTVGAHRNK 130


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 219 FRRYAPSSGSDRPLLTGLDSQYINNF 142
           F+R +    S +PLL+G+D    +NF
Sbjct: 226 FKRSSSCRNSRQPLLSGVDKHLTSNF 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,020,028
Number of Sequences: 5004
Number of extensions: 35569
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)