Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i07f
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0110 - 31727376-31727381,31727554-31727664,31728071-317281...    29   3.7  
02_02_0335 + 9063749-9064216,9064846-9064890,9065351-9065470,906...    27   8.5  

>03_06_0110 -
           31727376-31727381,31727554-31727664,31728071-31728133,
           31729202-31729331,31729532-31729701,31729800-31729859,
           31729941-31730018,31730108-31730197,31730275-31731118,
           31731220-31731281,31731362-31731423,31731511-31731700
          Length = 621

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +3

Query: 315 QQIMNITDQSLDEAQARKHTLNCHRMKPAL 404
           +QI N+    +DEA+   +++ C+++KPA+
Sbjct: 464 KQIRNVATGQVDEAKRVLNSIRCNKVKPAM 493


>02_02_0335 +
           9063749-9064216,9064846-9064890,9065351-9065470,
           9066025-9067527
          Length = 711

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/61 (26%), Positives = 33/61 (54%)
 Frame = +3

Query: 288 RKQDIGEILQQIMNITDQSLDEAQARKHTLNCHRMKPALFSVLCEIKEKTVLSLRNTQEE 467
           + +D  +I   I ++ D+  DE + R+H+ + HR        L EIK   V ++++ ++E
Sbjct: 308 KNKDKEKIAADIHSLQDELEDERRLRRHSEDLHR---KFGKELSEIKSAFVKAVKDLEKE 364

Query: 468 E 470
           +
Sbjct: 365 K 365


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,997,090
Number of Sequences: 37544
Number of extensions: 217303
Number of successful extensions: 432
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)