Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i07f
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34229| Best HMM Match : PBX (HMM E-Value=0)                        144   6e-35
SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_16817| Best HMM Match : zf-CCCH (HMM E-Value=0.15)                  28   6.6  

>SB_34229| Best HMM Match : PBX (HMM E-Value=0)
          Length = 313

 Score =  144 bits (348), Expect = 6e-35
 Identities = 65/75 (86%), Positives = 73/75 (97%)
 Frame = +3

Query: 288 RKQDIGEILQQIMNITDQSLDEAQARKHTLNCHRMKPALFSVLCEIKEKTVLSLRNTQEE 467
           RKQDIG+ILQQIM+ITDQSLDEAQA+KH LNCHRMKPALF+VLCEIKEKTVLS+R +QE+
Sbjct: 10  RKQDIGDILQQIMSITDQSLDEAQAKKHALNCHRMKPALFNVLCEIKEKTVLSIRGSQED 69

Query: 468 EPPDPQLMRLDNMLI 512
           EPPDPQLMRLDNML+
Sbjct: 70  EPPDPQLMRLDNMLL 84


>SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 272 RGWCAFSSRQPITL-RSHHSAAMRHHPVRIVH 180
           R    +SS+ P  L R HH    +HH +R VH
Sbjct: 857 RALIQYSSQHPAILPRKHHIIPRKHHIIRQVH 888


>SB_16817| Best HMM Match : zf-CCCH (HMM E-Value=0.15)
          Length = 794

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/62 (19%), Positives = 28/62 (45%)
 Frame = +3

Query: 327 NITDQSLDEAQARKHTLNCHRMKPALFSVLCEIKEKTVLSLRNTQEEEPPDPQLMRLDNM 506
           ++ D +  E  + K   +   ++   F  LCE+   ++  +    E+ P D  + +L  +
Sbjct: 724 DVVDGATAEESSEKAKKDAEELRIKAFEQLCEVFPDSIEKILQLLEDNPKDTSVEKLTQL 783

Query: 507 LI 512
           L+
Sbjct: 784 LL 785


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,894,254
Number of Sequences: 59808
Number of extensions: 255983
Number of successful extensions: 505
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)