Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i07f
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40935-7|AAA81691.3|  338|Caenorhabditis elegans C.elegans homeo...    88   4e-18
U01303-1|AAC46471.1|  338|Caenorhabditis elegans Ceh-20 protein.       88   4e-18

>U40935-7|AAA81691.3|  338|Caenorhabditis elegans C.elegans homeobox
           protein 20 protein.
          Length = 338

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 40/73 (54%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
 Frame = +3

Query: 297 DIGEILQQIMNITDQSLDEAQ-ARKHTLNCHRMKPALFSVLCEIKEKTVLSLRNTQEEEP 473
           ++ E+L  ++ I +Q+LD+   A+K  L CH M+ ALF VLCE KEKTVL++RN  +E P
Sbjct: 8   NLSELLDAVLKINEQTLDDNDSAKKQELQCHPMRQALFDVLCETKEKTVLTVRNQVDETP 67

Query: 474 PDPQLMRLDNMLI 512
            DPQLMRLDNML+
Sbjct: 68  EDPQLMRLDNMLV 80


>U01303-1|AAC46471.1|  338|Caenorhabditis elegans Ceh-20 protein.
          Length = 338

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 40/73 (54%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
 Frame = +3

Query: 297 DIGEILQQIMNITDQSLDEAQ-ARKHTLNCHRMKPALFSVLCEIKEKTVLSLRNTQEEEP 473
           ++ E+L  ++ I +Q+LD+   A+K  L CH M+ ALF VLCE KEKTVL++RN  +E P
Sbjct: 8   NLSELLDAVLKINEQTLDDNDSAKKQELQCHPMRQALFDVLCETKEKTVLTVRNQVDETP 67

Query: 474 PDPQLMRLDNMLI 512
            DPQLMRLDNML+
Sbjct: 68  EDPQLMRLDNMLV 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,265,643
Number of Sequences: 27780
Number of extensions: 201173
Number of successful extensions: 421
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)