Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11i06r
(738 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 38 0.002
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 30 0.30
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.91
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.91
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.2
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 28 1.6
SPAC19G12.04 |||ureidoglycolate hydrolase |Schizosaccharomyces p... 26 6.4
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 26 6.4
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom... 26 6.4
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 26 6.4
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 26 6.4
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 25 8.5
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz... 25 8.5
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 37.5 bits (83), Expect = 0.002
Identities = 50/194 (25%), Positives = 77/194 (39%), Gaps = 18/194 (9%)
Frame = -1
Query: 723 PTEVPLSSSTDGTTMATPR*TLSSDPPSLPFKT*MSSLLTGTDLL--------IQTTILP 568
PT P S+S+ + P T S+D S P T +S T T + + T+ P
Sbjct: 249 PTVPPTSTSSTSIPIP-PTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPP 307
Query: 567 PLASRMSVAP--SATFWFG-SSTMLEAIGTKCIXXXXXXXXXXXVMPDAKPVVAPHALQV 397
S S P ++T G SS+ L + T C P P V P +
Sbjct: 308 TSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTP-VTPTVPPTSTSS 366
Query: 396 WT--PPDHSGEETLTHSTAMLVITSNASTRTGVLLVFS-----TPAVMPTSTRMAAGTPN 238
+ PP S T T S+ +L +++ +T T + + TP V PTS+ T N
Sbjct: 367 TSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTN 426
Query: 237 PDAGSTPAHTVAPL 196
++ +T P+
Sbjct: 427 CTTSTSVPYTSTPV 440
Score = 35.5 bits (78), Expect = 0.008
Identities = 48/195 (24%), Positives = 74/195 (37%), Gaps = 19/195 (9%)
Frame = -1
Query: 723 PTEVPLSSSTDGTTMATPR*TLSSDPPSLPFKT*MSSLLTGTDL------LIQTTILPPL 562
PT P S+S+ + P T S+D S P T +S T T + + T I P +
Sbjct: 193 PTVPPTSTSSTSIPIP-PTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTV 251
Query: 561 ------ASRMSVAPSATFWFGS-STMLEAIGTKCIXXXXXXXXXXXVMPDAKPVVAPHAL 403
++ + + P++T + S+ L T C P V
Sbjct: 252 PPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTS 311
Query: 402 QVWTPPDHSGEETLTHSTAMLVITSNASTR------TGVLLVFSTPAVMPTSTRMAAGTP 241
TPP + + S++ L TS + T TG TP V PTST + P
Sbjct: 312 STSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPP 371
Query: 240 NPDAGSTPAHTVAPL 196
P + S+ + +PL
Sbjct: 372 PPASTSSTGTSSSPL 386
Score = 25.4 bits (53), Expect = 8.5
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = -1
Query: 732 TTAPTEVPLSSSTDGTTMATPR*TLSSDPPSLPFKT*MSSL-LTGTDLLIQT-TILPPLA 559
T +P E+ +S T T+ +TP T S+ S T SS L T T T +PP
Sbjct: 66 TGSPVEITSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPPTG 125
Query: 558 SRMSVAPSAT 529
S++ T
Sbjct: 126 GSSSLSTPIT 135
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 30.3 bits (65), Expect = 0.30
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Frame = -1
Query: 360 THSTAMLVITSNASTRTGVLLVFSTPAVMPTSTRMAAGTPNPDAGSTPAHTVAPLN*WHP 181
T ST + S+ S +T L+ S+P + + T + TP H++ P N
Sbjct: 539 TPSTTIPTSNSSVSLQTSSSLIISSPIISSSLTATSTSTP------ALTHSITPSN---- 588
Query: 180 VFVLTTWLEDAVVTSGKPSFPTAMVELCIWATETLGSADPASTV*ELATPGLS--KSNE 10
T +++ S + ++++ +C T + S AS + L + +S KS+E
Sbjct: 589 -----TSYTSSLIPSSSTDYSSSLITVCSNVTSEISSTSLASLISTLTSQQISSNKSSE 642
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.7 bits (61), Expect = 0.91
Identities = 49/223 (21%), Positives = 87/223 (39%), Gaps = 4/223 (1%)
Frame = -1
Query: 705 SSSTDGTTMATP--R*TLSSDPPSLPFKT*MSSLLTGTDLLIQTTILPPLASRMSVAPSA 532
SSST+ TT ATP T SS + + SS L + L T+ +S S A S
Sbjct: 161 SSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAASN 220
Query: 531 TFWFGSSTMLEAIGTKCIXXXXXXXXXXXVMPDAKPVVAPHALQVWTPPDHSGEETLTHS 352
+ SS++ + + + P+ + ++ T + ++
Sbjct: 221 S--ATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNT 278
Query: 351 TAMLVITSNASTRTGVLLVFSTPAVMPTSTRMAA--GTPNPDAGSTPAHTVAPLN*WHPV 178
+++L S+ + T + ST A +ST + + T A STP +V+ N
Sbjct: 279 SSLL--PSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTAT 336
Query: 177 FVLTTWLEDAVVTSGKPSFPTAMVELCIWATETLGSADPASTV 49
+T L T+ + T + + T T S+ P ++V
Sbjct: 337 STSSTPLSSVNSTTATSASSTPLTSVNS-TTATSASSTPLTSV 378
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 0.91
Identities = 31/85 (36%), Positives = 39/85 (45%), Gaps = 15/85 (17%)
Frame = +3
Query: 369 PPHCGPA-GSKPV----TRA-GRPPAWRPALPTT*APKLKPI----RCTW--FQLPPALL 512
PP P+ G +P +RA PPA PA+P AP L P+ R + PP+L
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLP 424
Query: 513 MSQTKKLPRARPTS---GTPAAAVL 578
S LP + P S G PAA L
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPL 449
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 1.2
Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Frame = -1
Query: 426 PVVAPHALQVWTPPDHSGEETLTHSTAMLVITSNASTRTGVLLVFSTPAVMPTSTRMAAG 247
PV AP A Q+ G++ S+ + ++++ ST V+ P PT A
Sbjct: 1270 PVAAPTAQQI-----QPGKQASAVSSNVPAVSASISTPPAVVPTVQHP--QPTKQIPTAA 1322
Query: 246 TPNPDAGSTPAHTV-----APLN*WHPVFVLTTWLEDAVVTSGKPSFP 118
+P ST +T APL L + AV TS KP P
Sbjct: 1323 VKDPSTTSTSFNTAPIPQQAPLENQFSKMSLEPPVRPAVPTSPKPQIP 1370
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3
Query: 112 NGGTLHMGNGNFGK 71
NGG +H G GNFGK
Sbjct: 706 NGGLIHQGVGNFGK 719
>SPAC19G12.04 |||ureidoglycolate hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 191
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 333 TSNASTRTGVLLVFST-PAVMPTSTRMAA 250
+S+ASTR GV FST P+V P + AA
Sbjct: 55 SSSASTRKGVWNFFSTHPSVHPANDEHAA 83
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 50 TVEAGSALPKVSVAHMQSSTIAVGKLGFPDVTTASSNQVVST 175
T E G+ LPK HM++ T +V K+ D T + + V+T
Sbjct: 611 TSEKGNILPKTVETHMKALTTSVDKV--LDQTAEALEEFVNT 650
>SPCC1183.06 |ung1||uracil DNA N-glycosylase
Ung1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -1
Query: 381 HSGEETLTHSTAMLVITSNASTRTGVLLVFSTPA 280
HSG+ T ++A+L + N + + V+L + TPA
Sbjct: 214 HSGKGWETFTSAVLQVALNRNRKGLVILAWGTPA 247
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 6.4
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -1
Query: 732 TTAPTEVPLSSSTDGTTMATPR*TLSSDPPSLPFKT*MSSLLTGT 598
TT PT VP SSST + TP+ + P L +T ++ LT +
Sbjct: 406 TTDPTLVPQSSSTPKSAQKTPQKLPAFLPNRLTAETVDTNKLTAS 450
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 25.8 bits (54), Expect = 6.4
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 197 SGA-TV*AGVDPASGLGVPAAIRVEVGITAGVENTKSTPVRVDAFDVMTSIAV 352
SGA T+ AG P GLG EVGI+A N K +A + S AV
Sbjct: 428 SGARTLPAGCGPCIGLGTGLLKDGEVGISATNRNFKGRMGSREALAYLASPAV 480
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 2 MFVSFDLERPGVASSQTVEAGSALPKV 82
+ +++D+ RP + S+ VE SAL +
Sbjct: 155 VIITYDVRRPNLGSTSFVEMSSALSNI 181
>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 375
Score = 25.4 bits (53), Expect = 8.5
Identities = 17/66 (25%), Positives = 26/66 (39%)
Frame = -1
Query: 429 KPVVAPHALQVWTPPDHSGEETLTHSTAMLVITSNASTRTGVLLVFSTPAVMPTSTRMAA 250
K ++ H WTP S T T + + + + T T +TP V +A
Sbjct: 36 KEIIDQHT-STWTPVVSSVTSTQTDTLRVTISEVVSVTATLTETFTATPTVTSVVHALAT 94
Query: 249 GTPNPD 232
P+PD
Sbjct: 95 TDPHPD 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,330,642
Number of Sequences: 5004
Number of extensions: 73559
Number of successful extensions: 257
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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