Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11i06r
(738 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20130.1 68414.m02518 family II extracellular lipase, putativ... 33 0.20
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 31 0.80
At5g15860.2 68418.m01856 expressed protein 31 1.1
At5g15860.1 68418.m01855 expressed protein 31 1.1
At3g02410.1 68416.m00228 hypothetical protein weak similarity to... 30 1.4
At2g31710.1 68415.m03870 expressed protein 30 1.4
At1g61080.1 68414.m06877 proline-rich family protein 30 1.4
At1g30860.1 68414.m03774 expressed protein 29 3.2
At3g16870.1 68416.m02157 zinc finger (GATA type) family protein ... 29 4.3
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 29 4.3
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 29 4.3
At2g25050.1 68415.m02996 formin homology 2 domain-containing pro... 29 4.3
At1g14920.1 68414.m01783 gibberellin response modulator (GAI) (R... 29 4.3
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 28 5.6
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 28 5.6
At2g02780.1 68415.m00221 leucine-rich repeat transmembrane prote... 28 5.6
At5g16820.2 68418.m01971 heat shock factor protein 3 (HSF3) / he... 28 7.4
At5g16820.1 68418.m01970 heat shock factor protein 3 (HSF3) / he... 28 7.4
At2g25200.1 68415.m03014 expressed protein 28 7.4
At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /... 28 7.4
At5g08230.1 68418.m00965 PWWP domain-containing protein putative... 27 9.8
At1g77390.1 68414.m09012 cyclin, putative similar to mitotic cyc... 27 9.8
At1g71440.1 68414.m08253 tubulin folding cofactor E / Pfifferlin... 27 9.8
>At1g20130.1 68414.m02518 family II extracellular lipase, putative
contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
Length = 1006
Score = 33.1 bits (72), Expect = 0.20
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +3
Query: 369 PPHCGPAGSKPVTRAGRPPAWRPALPTT*APKLKPIRCTWFQLPPA 506
PP C P KP + PP +PA P P KP+ C PPA
Sbjct: 65 PPACPPTPPKPQPKPAPPPEPKPAPP----PAPKPVPCPSPPKPPA 106
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 31.1 bits (67), Expect = 0.80
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = +3
Query: 369 PPHCGPAGSKPVTRAGRPPAWRPALPTT*AP-KLKPIRCTWFQLPPALLMSQTKKLPRAR 545
PP P KP T +PP P P T P + P++ ++ PP + P +
Sbjct: 116 PPSVQPPTYKPPTPTVKPPTTSPVKPPTTPPVQSPPVQPPTYK-PPTSPVKPPTTTPPVK 174
Query: 546 PTSGTP 563
P + TP
Sbjct: 175 PPTTTP 180
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/65 (30%), Positives = 21/65 (32%)
Frame = +3
Query: 369 PPHCGPAGSKPVTRAGRPPAWRPALPTT*APKLKPIRCTWFQLPPALLMSQTKKLPRARP 548
PP P S PV P P P T P +KP T PP T P P
Sbjct: 141 PPTTPPVQSPPVQPPTYKPPTSPVKPPTTTPPVKPPTTTPPVQPPTYNPPTTPVKPPTAP 200
Query: 549 TSGTP 563
P
Sbjct: 201 PVKPP 205
>At5g15860.2 68418.m01856 expressed protein
Length = 299
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/68 (30%), Positives = 37/68 (54%)
Frame = -3
Query: 640 LAVQDVNVIVVDWHRLANSNYNTAAAGVPDVGRALGNFLVWLINNAGGNWNQVHLIGFSL 461
LA +D+ V +D+ N T + V D + + +F+ I+ GG+ N+++L+G S
Sbjct: 181 LAERDIIVACLDYR---NFPQGTISDMVTDASQGI-SFVCNNISAFGGDPNRIYLMGQSA 236
Query: 460 GAHVVGNA 437
GAH+ A
Sbjct: 237 GAHIAACA 244
>At5g15860.1 68418.m01855 expressed protein
Length = 427
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/68 (30%), Positives = 37/68 (54%)
Frame = -3
Query: 640 LAVQDVNVIVVDWHRLANSNYNTAAAGVPDVGRALGNFLVWLINNAGGNWNQVHLIGFSL 461
LA +D+ V +D+ N T + V D + + +F+ I+ GG+ N+++L+G S
Sbjct: 181 LAERDIIVACLDYR---NFPQGTISDMVTDASQGI-SFVCNNISAFGGDPNRIYLMGQSA 236
Query: 460 GAHVVGNA 437
GAH+ A
Sbjct: 237 GAHIAACA 244
>At3g02410.1 68416.m00228 hypothetical protein weak similarity to
kynurenine formamidase [Mus musculus] GI:21552719
Length = 422
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/64 (31%), Positives = 36/64 (56%)
Frame = -3
Query: 640 LAVQDVNVIVVDWHRLANSNYNTAAAGVPDVGRALGNFLVWLINNAGGNWNQVHLIGFSL 461
LA +D+ V +D+ N T + V D + + +F+ I+ GG+ N+++L+G S
Sbjct: 176 LAERDIIVACLDYR---NFPQGTISDMVSDAAQGI-SFVCNNISAFGGDPNRIYLMGQSA 231
Query: 460 GAHV 449
GAH+
Sbjct: 232 GAHI 235
>At2g31710.1 68415.m03870 expressed protein
Length = 105
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 6/46 (13%)
Frame = -3
Query: 709 VVIVHGWNNN---GNTQMNP---LIRSAFLAVQDVNVIVVDWHRLA 590
+ I++G+NN+ G+T ++P + S FLAV VNV++V + LA
Sbjct: 20 IAILYGFNNDLLPGSTTLSPHSLTLLSGFLAVVSVNVVIVFYICLA 65
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 30.3 bits (65), Expect = 1.4
Identities = 24/70 (34%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Frame = +3
Query: 369 PPHCGPAGSKPVTRAGRPPAWRPALPTT*A---PKLKPIRCTWFQLPPALLMSQTKKLPR 539
PP P KP+ + PP P LPTT A P P R PP P
Sbjct: 492 PPPPTPPAFKPLKGSAPPPPPPPPLPTTIAAPPPPPPPPRAAVAPPPPPPPPGTAAAPPP 551
Query: 540 ARPTSGTPAA 569
P GT AA
Sbjct: 552 PPPPPGTQAA 561
>At1g30860.1 68414.m03774 expressed protein
Length = 730
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 211 HGRATELMASSVRTNHLVGRRCGNIWEAELSNCNGG 104
+ R E S R ++LV IWEA L+ NGG
Sbjct: 55 NNRVLESPLESKRNDNLVASSLVQIWEARLNRSNGG 90
>At3g16870.1 68416.m02157 zinc finger (GATA type) family protein
contains Pfam profile:PF00320 GATA:GATA zinc finger
Length = 190
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Frame = +2
Query: 350 VECVRVSSPLWSGG----VQTCNACG 415
V+C + +PLW GG CNACG
Sbjct: 45 VDCGTIRTPLWRGGPAGPKSLCNACG 70
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 28.7 bits (61), Expect = 4.3
Identities = 26/90 (28%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Frame = -3
Query: 589 NSNYNTAAAGVPDVGRAL----GNFLV-WLINNAGGNWNQVHLIGFSLGAHVVGNAGRQA 425
NSN NT G L GN V W G N + F G + G
Sbjct: 333 NSNSNTYMGGSSSGNNTLSGPFGNSGVNWGAPGGGNNAVSNENVKFGYGGNGESGFGLGT 392
Query: 424 GGRPARVTGLDPAGPQWGGNSNALNRNAGH 335
GG AR G + A P +S + N G+
Sbjct: 393 GGYAARNPGANKAAPSSSFSSASATNNTGY 422
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 28.7 bits (61), Expect = 4.3
Identities = 26/90 (28%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Frame = -3
Query: 589 NSNYNTAAAGVPDVGRAL----GNFLV-WLINNAGGNWNQVHLIGFSLGAHVVGNAGRQA 425
NSN NT G L GN V W G N + F G + G
Sbjct: 333 NSNSNTYMGGSSSGNNTLSGPFGNSGVNWGAPGGGNNAVSNENVKFGYGGNGESGFGLGT 392
Query: 424 GGRPARVTGLDPAGPQWGGNSNALNRNAGH 335
GG AR G + A P +S + N G+
Sbjct: 393 GGYAARNPGANKAAPSSSFSSASATNNTGY 422
>At2g25050.1 68415.m02996 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 1111
Score = 28.7 bits (61), Expect = 4.3
Identities = 35/132 (26%), Positives = 50/132 (37%)
Frame = +3
Query: 108 PLQLESSASQMLPQRLPTKWLVRTLDAINSVARPCEQVLIRHPGWGFLPPFG*KSASPLG 287
P ++S + LP R PT+ ++ +S I H G S+SP
Sbjct: 453 PRMVQSPVTSPLPNRSPTQGSPASISRFHSSPSSLGITSILHDH-GSCKDEESTSSSP-- 509
Query: 288 LKIPRARPSVWMHST**PALRLSALEFPPHCGPAGSKPVTRAGRPPAWRPALPTT*APKL 467
A PS+ T P + P C P PV G PP+ A+ ++ P L
Sbjct: 510 -----ASPSISFLPTLHPLTSSQPKKASPQC-PQSPTPVHSNG-PPSAEAAVTSSPLPPL 562
Query: 468 KPIRCTWFQLPP 503
KP+R PP
Sbjct: 563 KPLRILSRPPPP 574
>At1g14920.1 68414.m01783 gibberellin response modulator (GAI)
(RGA2) / gibberellin-responsive modulator identical to
GAI GB:CAA75492 GI:2569938 [Arabidopsis thaliana] (Genes
Dev. In press)
Length = 533
Score = 28.7 bits (61), Expect = 4.3
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Frame = -3
Query: 487 QVHLIGFSLGAHVVGNAGRQA-----GGRPA-RVTGLDPAGPQWGGNSNALNRNAGHYVE 326
+VH+I FS+ + A QA GG P R+TG+ P P + + H E
Sbjct: 270 RVHVIDFSMSQGLQWPALMQALALRPGGPPVFRLTGIGPPAPDNFDYLHEVGCKLAHLAE 329
Query: 325 CIHTDGRALG-IFNPSGDAD 269
IH + G + N D D
Sbjct: 330 AIHVEFEYRGFVANTLADLD 349
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 28.3 bits (60), Expect = 5.6
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = +3
Query: 303 ARPSVWMHST**PALRLS--ALEFPPHCGPAGSKPVTRAGRPPAWRPALPTT*APKLKPI 476
A P++ ST P+ R++ ++ P P G+ P + +PP+ R PT P+
Sbjct: 174 APPTLRPASTRVPSQRITPHSVPSPRPSSPRGASPQAISSKPPSPRAEPPTLDTPRPPSP 233
Query: 477 RCTWFQLPPALLMSQTKKLPRARPTSGTP 563
R A L + +L ARPT+ P
Sbjct: 234 RA-------ASLRADPPRLDAARPTTPRP 255
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 28.3 bits (60), Expect = 5.6
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = +3
Query: 303 ARPSVWMHST**PALRLS--ALEFPPHCGPAGSKPVTRAGRPPAWRPALPTT*APKLKPI 476
A P++ ST P+ R++ ++ P P G+ P + +PP+ R PT P+
Sbjct: 173 APPTLRPASTRVPSQRITPHSVPSPRPSSPRGASPQAISSKPPSPRAEPPTLDTPRPPSP 232
Query: 477 RCTWFQLPPALLMSQTKKLPRARPTSGTP 563
R A L + +L ARPT+ P
Sbjct: 233 RA-------ASLRADPPRLDAARPTTPRP 254
>At2g02780.1 68415.m00221 leucine-rich repeat transmembrane protein
kinase, putative
Length = 753
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -3
Query: 244 PQPGCRINTCSHGRATELMASSVRTNHLVG 155
P P RI C HG TEL + RT+ L G
Sbjct: 64 PSPSLRI-ICLHGHVTELTVTGNRTSKLSG 92
>At5g16820.2 68418.m01971 heat shock factor protein 3 (HSF3) / heat
shock transcription factor 3 (HSTF3) identical to heat
shock transcription factor 3 (HSF3) SP:O81821 from
[Arabidopsis thaliana]
Length = 481
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 252 AGTPNPDAGSTPAHTVAPLN*WHPVFVL 169
AG P+ G +PA AP + W P F L
Sbjct: 342 AGLVQPNIGQSPAQGAAPADSWSPEFDL 369
>At5g16820.1 68418.m01970 heat shock factor protein 3 (HSF3) / heat
shock transcription factor 3 (HSTF3) identical to heat
shock transcription factor 3 (HSF3) SP:O81821 from
[Arabidopsis thaliana]
Length = 481
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 252 AGTPNPDAGSTPAHTVAPLN*WHPVFVL 169
AG P+ G +PA AP + W P F L
Sbjct: 342 AGLVQPNIGQSPAQGAAPADSWSPEFDL 369
>At2g25200.1 68415.m03014 expressed protein
Length = 354
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 215 AGVDPASGLGVPAAIRVEVGITAGVENTKSTPVR 316
+G DP SG V + EVG+ G N K P R
Sbjct: 139 SGPDPESGFYVAVFVSGEVGLLVGGGNLKQRPRR 172
>At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /
gibberellin-responsive modulator identical to GB:Y11336,
member of SCARECROW family
Length = 587
Score = 27.9 bits (59), Expect = 7.4
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Frame = -3
Query: 487 QVHLIGFSLGAHVVGNAGRQA-----GGRPA-RVTGLDPAGPQWGGNSNALNRNAGHYVE 326
+VH+I FS+ + A QA GG P R+TG+ P P + + + E
Sbjct: 322 RVHVIDFSMNQGLQWPALMQALALREGGPPTFRLTGIGPPAPDNSDHLHEVGCKLAQLAE 381
Query: 325 CIHTDGRALG-IFNPSGDAD 269
IH + G + N D D
Sbjct: 382 AIHVEFEYRGFVANSLADLD 401
>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
transcription factor (HUA2) - Arabidopsis thaliana,
EMBL:AF116556
Length = 1445
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 44 SQTVEAGSALPKVSVAHMQSSTIAVGKLGFPDVTTASSNQVVSTNTG 184
S + E + +V + HM+ +A+GKL D ++ + VV N G
Sbjct: 1040 STSQEVKNTHMEVKITHMEEPVLALGKLEAHDSSSDKPHCVVDVNGG 1086
>At1g77390.1 68414.m09012 cyclin, putative similar to mitotic cyclin
a2-type [Glycine max] GI:857397; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 442
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 286 PSGDADFYPNGGRNPQPGCRINTCSH 209
P GD NG RNP P + CS+
Sbjct: 35 PLGDITNQKNGSRNPSPSSTLVNCSN 60
>At1g71440.1 68414.m08253 tubulin folding cofactor E / Pfifferling
(PFI) almost identical to tubulin folding cofactor E
(Pfifferling; PFI) GI:20514267 from [Arabidopsis
thaliana]; identical to cDNA tubulin folding cofactor E,
GI:20514266
Length = 531
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Frame = -3
Query: 589 NSNYNTAAAGVPDVGRALGNFLVWLINNAGGNWNQVHLIGFSLGA----HVVGN 440
N + N+ ++ + + + L N V ++NN+G +W QV ++ SL H++GN
Sbjct: 192 NLSCNSLSSDIKSLPQ-LKNIRVLVLNNSGLSWTQVEILRRSLPGIEELHLMGN 244
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,340,823
Number of Sequences: 28952
Number of extensions: 437078
Number of successful extensions: 1478
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1475
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -