Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i06f
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   0.40 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.53 
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    27   1.6  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    27   2.1  
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||...    26   3.7  
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|...    26   3.7  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    26   3.7  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   4.9  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   8.6  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
 Frame = +2

Query: 275 TATSTP*GIHTTAPTEVPLSSSTDGTTMATPR*TLS---SDPPSLPFKT*MSSLLTGTDL 445
           T TSTP    T APT    +SS   TT   P  + S   S+    P  T  SS    T  
Sbjct: 603 TPTSTPLSNSTVAPTST-FTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSG 661

Query: 446 LIQTTILPPLASRMSVAPSATF 511
           L  ++   P +S  S+ P++TF
Sbjct: 662 LPTSSASTP-SSNSSIVPTSTF 682


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
 Frame = +2

Query: 203 PEAAPIISTGFSPDRTKTIARCL*TATSTP*GIHTTAPT--EVPLSSSTDGTTMATPR*T 376
           P  A   STG S     + +    T+TS P   ++T P    VP +S++  +T   P  T
Sbjct: 317 PPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPAST 376

Query: 377 LSSDPPSLPFKT*MSSLLTGTDL 445
            S+   S P  +  +S  T T +
Sbjct: 377 SSTGTSSSPLLSTSTSCTTSTSI 399



 Score = 26.6 bits (56), Expect = 2.8
 Identities = 27/116 (23%), Positives = 47/116 (40%)
 Frame = +2

Query: 203 PEAAPIISTGFSPDRTKTIARCL*TATSTP*GIHTTAPTEVPLSSSTDGTTMATPR*TLS 382
           P  A   STG S     + +    T+TS P   ++T P    +  ++  T + T   T S
Sbjct: 371 PPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTS 430

Query: 383 SDPPSLPFKT*MSSLLTGTDLLIQTTILPPLASRMSVAPSATFWFGSSTMLEAIGT 550
           +  P     T ++S    T     +T +P  ++ ++  P  T    +ST +    T
Sbjct: 431 TSVPYT--STPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTST 484



 Score = 25.8 bits (54), Expect = 4.9
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +2

Query: 299 IHTTAPTEVPLSSSTDGTTMATPR*TLSSDPPSLPFKT*MSSL-LTGTDLLIQT-TILPP 472
           + T +P E+  +S T  T+ +TP  T S+   S    T  SS  L  T     T T +PP
Sbjct: 64  LSTGSPVEITSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPP 123

Query: 473 LASRMSVAPSAT 508
                S++   T
Sbjct: 124 TGGSSSLSTPIT 135


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +2

Query: 290 P*GIHTTAPTEVPLSSSTDGTTMATPR*TLSSDPPSLPFKT*MSSLLTGT 439
           P  + TT PT VP SSST  +   TP+   +  P  L  +T  ++ LT +
Sbjct: 401 PSSLSTTDPTLVPQSSSTPKSAQKTPQKLPAFLPNRLTAETVDTNKLTAS 450


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 28/108 (25%), Positives = 39/108 (36%), Gaps = 6/108 (5%)
 Frame = +2

Query: 200 APEAAPIISTGFSPDRTKTIARCL*TATSTP*GIHTTAPTEVPLSSSTDGTTMATPR*TL 379
           A    P++ T   P    T    + T T TP    TT    V    +    TM TP    
Sbjct: 89  AAMTTPMVETTTIPTVETTTTPMVETTTITPMVETTTITPMVEAMITLMEETMTTPMEET 148

Query: 380 SSDPPSLPFKT*MSSLLTGTDLLIQTTI------LPPLASRMSVAPSA 505
           ++  P     T M    T T ++  TTI        P+   M++ P A
Sbjct: 149 TTILPMAAMTTPMEETTTTTPMVETTTIPTVETMTTPMVEAMTILPMA 196


>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -1

Query: 300 IPHGVDVAVHKHLAIVLVLSGEKPVLIIGAASGAQ*FIVDGFMQV 166
           I HG D      + + L +S  KP++++GA   +     DG M +
Sbjct: 122 ITHGTDSLEETAMFLDLTISTAKPIVVVGAMRPSTAIGADGPMNL 166


>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -1

Query: 300 IPHGVDVAVHKHLAIVLVLSGEKPVLIIGAASGAQ*FIVDGFMQV 166
           I HG D      + + L +S  KP++++GA   +     DG M +
Sbjct: 122 ITHGTDSLEETAMFLDLTISTAKPIVVVGAMRPSTAIGADGPMNL 166


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +2

Query: 287 TP*GIHTTAPTEVPLSSSTDGTTMATPR*TLSSDPPSLPFKT*MSSLLTGTDLLIQ 454
           TP   +++ P E P S S    TM  P         S+PF T  + L  G  ++ Q
Sbjct: 401 TPSFFNSSQPIETPSSYSHLSDTMLVPANMAGIPSVSIPFGTLNNGLPMGIQIMAQ 456


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
 Frame = +2

Query: 209 AAPIISTGFSPDRTKTIARCL*TATST-----P*GIHTTAPTEVPLSSSTDGTTMATPR* 373
           +A + +T FS   T+T    + +   T     P   H +  T VP ++S + TT   P  
Sbjct: 41  SANVTTTSFSSASTETSTHSVTSTNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTT 100

Query: 374 TLSSDPPSLPFKT*MSSLLTGTDLLIQTTILPPL--ASRMSVAPSAT 508
           +L++   + P  T ++S          TT++PP    +  +V P  T
Sbjct: 101 SLNTTTTTAPPTTHVNST---------TTVVPPTTHVNTTTVVPPTT 138


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 443 LLIQTTILPPLASRMSVAPSATFWFGSSTML 535
           L +QT  +PP+    S+ PS      SS+++
Sbjct: 656 LFVQTNCIPPVTQASSLVPSKNNTASSSSLM 686


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,603,050
Number of Sequences: 5004
Number of extensions: 54956
Number of successful extensions: 177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)