Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i05r
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    31   0.21 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   2.0  
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom...    26   4.5  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    26   4.5  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    26   4.5  
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    26   6.0  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   7.9  

>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 524 LKEVYLDDNNLSELSPDLMPWSKLDVLGMTGNS 426
           L E+Y++ NNL+ L P++     L +L  +GNS
Sbjct: 183 LTELYINHNNLTRLPPEIGKLKNLVILDASGNS 215


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 93  INIVNWLTLEPCLIYFLDCINKKSQDHAKR-SYHCNGKD 206
           I+I+ W+T+EP  + F+  +   SQ +A R      GKD
Sbjct: 202 ISILGWVTVEPTPLSFMSEMKDSSQFYANRVMKEFKGKD 240


>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 245 SLSDLRPKHVLWTILAVAMVAAFGMILGLLVNAIKKVYKTRFQSQP 108
           ++ +L P  V       A   A+G +  +L+++ KKVY    QSQP
Sbjct: 134 TMQELLPSDVATPAFLEAWTTAYGNLAKILIDSEKKVY----QSQP 175


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 315 IHYKYYYQLLSNVRQDIFT*EDF*FIRFEAKTC 217
           I Y+++ +L+    QD F+ EDF  +R   K C
Sbjct: 647 IDYQHFIELIDLHVQDEFSKEDFDTVRANVKEC 679


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = -3

Query: 347 YCAAPMRLS-GEYITNITINFCPMLDKTFSPRKTFSLSDLRPKHVLWTILAVAMVAAFGM 171
           Y +  MR   G  +    INF   +D    P   +S+   R  H  W  +A    + FG+
Sbjct: 287 YLSRQMRSEVGNVVYPDNINFFNYVDYLLVPSLVYSMEFPRVAHFRWHYMAFKAGSTFGL 346

Query: 170 I 168
           +
Sbjct: 347 L 347


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 584 CDINAGPSSFSKV 622
           CD+  GPSSF KV
Sbjct: 186 CDVEVGPSSFEKV 198


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 548 RGLKDKWTLKEVYLDDNNLSE 486
           RGLKD++ L ++Y  D N  +
Sbjct: 208 RGLKDEFVLVKIYATDKNFEQ 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,748
Number of Sequences: 5004
Number of extensions: 57805
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)