Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11i05f
(574 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 27 1.5
SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces pom... 27 1.5
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 27 1.5
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 27 2.6
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 26 4.5
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family... 25 6.0
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 25 6.0
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||... 25 7.9
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 7.9
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 25 7.9
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 27.5 bits (58), Expect = 1.5
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Frame = +3
Query: 264 QLSPIPGNRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRSEIFQGPYEDG 443
++ P I+++ N +++ D +L LD+SNN LRS P
Sbjct: 423 KIYPYAHELISLNVSHNLSLDLPLDFMERCVKLKRLDISNN------LRS-----PRGKP 471
Query: 444 IYREIALETLNLGYNEIHSLDRYLFK--YTPNLTRLYLNNNPI 566
I LE LN+ N+I+ LD +F +L L + NN +
Sbjct: 472 ITALRQLEVLNMSRNDIYELDPLIFSGLSRNSLKELNIANNKL 514
>SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 186
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -1
Query: 352 MFLKASSSISITRFDLKLIAILFPGIGLSCVIFVMLLLKNVTR 224
M + S + S+ D KL L +GLSC I ++L L TR
Sbjct: 126 MVVDVSPAFSVNPIDKKLAIGL--SVGLSCCILIVLFLHFATR 166
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 27.5 bits (58), Expect = 1.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 206 KQRWSRPSDVFQQQHYKYNATESD 277
K +++RPSD ++ ++ YNA SD
Sbjct: 96 KGKFTRPSDEYESEYSDYNAQPSD 119
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 26.6 bits (56), Expect = 2.6
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +3
Query: 156 RRDIVKIPNWPE----QINNISKDGHVLVTFFNNSITNITQLSPIPGNRIAISFK 308
R D+ + N+ E ++ N+S D H F S+T+ ++ P +R + K
Sbjct: 1073 RNDVAQEDNFIELSSNEVRNVSNDEHKHTLFHGQSLTHNNLIAVTPPSRTGVEHK 1127
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 25.8 bits (54), Expect = 4.5
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +3
Query: 168 VKIPNWPEQINNISKDGHVLVTFFNNSITNITQLSPIPGNRIAISFKSNRVIEIEDDAFR 347
+K NWP ++N SKD V+ N + QL+P +R + ++ V++ + +
Sbjct: 275 LKAANWPRTVSNFSKD----VSDGENYTVLLNQLAPELCSRAPL--QTTDVLQRAEQVLQ 328
Query: 348 NIPRL 362
N +L
Sbjct: 329 NAEKL 333
>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 371
Score = 25.4 bits (53), Expect = 6.0
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -1
Query: 175 ILTMSRREQFSVRLLVSSTDISQGALGASAP-ARFDDTRTIVIVNTAGKYIFLDNSQH 5
+L S E+ V+LL SS S+ A FD+ + ++++ K+I L+N H
Sbjct: 6 LLKKSIAEKKDVKLLASSEATSKVEKIEDAQYILFDENTSPILIDEPTKFIKLENDSH 63
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 25.4 bits (53), Expect = 6.0
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = -1
Query: 355 GMFLKASSSISITRFDLKLIAILFPGIGLSCVI 257
G+F++ ++ +F+ K +A LF I ++C+I
Sbjct: 200 GVFIRVFYLVNKEKFEKKELAFLFSSIVVACLI 232
>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 322
Score = 25.0 bits (52), Expect = 7.9
Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = +3
Query: 237 FNNSITNITQLSPIPGNRIAISFKSNRVIEIEDDAFR-NIPRLVYLDLSNNKISGQVLRS 413
+ +I +++ S +P + A ++ +D + + RL L+ + N S ++
Sbjct: 24 YTRNIMSVSASSLVPKDFRAFRIGLVQLANTKDKSENLQLARLKVLEAAKNG-SNVIVLP 82
Query: 414 EIFQGPYEDGIYREIA--LETLNLGYNEIHSL 503
EIF PY G + + A +E + Y + S+
Sbjct: 83 EIFNSPYGTGYFNQYAEPIEESSPSYQALSSM 114
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.0 bits (52), Expect = 7.9
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +3
Query: 33 FPAVLTITIVLVSSNRAGADAPSAPCDISVEDTSNLTLNCSRRD 164
FP+ + V+ + G D A D +D + LT+N +R++
Sbjct: 498 FPSPDEVKTCFVAHSLQGEDTSMAILDFVAQDKALLTMNVTRQE 541
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 25.0 bits (52), Expect = 7.9
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 291 IAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKISG 398
+++ N + EI A +P+L L+L++NKI+G
Sbjct: 359 VSLDLSGNELTEIPY-ALGELPQLCSLNLASNKITG 393
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,298,525
Number of Sequences: 5004
Number of extensions: 46038
Number of successful extensions: 149
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -