Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11i05f
(574 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33) 44 1e-04
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.018
SB_26267| Best HMM Match : TSP_C (HMM E-Value=0) 36 0.018
SB_22441| Best HMM Match : LRR_1 (HMM E-Value=1.8e-19) 35 0.054
SB_52093| Best HMM Match : LRR_1 (HMM E-Value=1.3e-05) 33 0.13
SB_57674| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31) 32 0.29
SB_51747| Best HMM Match : LRR_1 (HMM E-Value=2.5e-16) 31 0.67
SB_22518| Best HMM Match : DUF847 (HMM E-Value=1.10001e-40) 31 0.88
SB_14633| Best HMM Match : LRR_1 (HMM E-Value=3.4e-12) 31 0.88
SB_35110| Best HMM Match : LRR_1 (HMM E-Value=3.9e-09) 30 1.2
SB_8041| Best HMM Match : LRR_1 (HMM E-Value=1.2e-06) 30 1.5
SB_52582| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-39) 29 2.0
SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_19770| Best HMM Match : LRR_1 (HMM E-Value=1.7e-06) 29 2.7
SB_29302| Best HMM Match : LRR_1 (HMM E-Value=1.1e-11) 29 3.6
SB_53214| Best HMM Match : LRR_1 (HMM E-Value=7.4e-06) 29 3.6
SB_35875| Best HMM Match : RVT_1 (HMM E-Value=5.2e-24) 28 4.7
SB_10898| Best HMM Match : Galactosyl_T (HMM E-Value=1.9e-22) 28 4.7
SB_20569| Best HMM Match : LRR_1 (HMM E-Value=1.1e-27) 28 4.7
SB_11265| Best HMM Match : LRR_1 (HMM E-Value=0.23) 28 4.7
SB_51625| Best HMM Match : LRR_1 (HMM E-Value=2.7e-10) 28 6.2
SB_6204| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
>SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33)
Length = 1065
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/88 (29%), Positives = 50/88 (56%)
Frame = +3
Query: 297 ISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRSEIFQGPYEDGIYREIALETLN 476
+ +N + +I+D F N+ L L+L NKI + + + +F+G ++LE L+
Sbjct: 98 LDLSNNDISDIQDGTFENLRYLKQLNLGENKI--RTVSASMFKG--------LVSLEKLD 147
Query: 477 LGYNEIHSLDRYLFKYTPNLTRLYLNNN 560
L +N++ +L R +FK +L L+L++N
Sbjct: 148 LRFNDLKALPRGVFKPLKSLRELFLHDN 175
Score = 37.5 bits (83), Expect = 0.008
Identities = 27/81 (33%), Positives = 46/81 (56%)
Frame = +3
Query: 327 IEDDAFRNIPRLVYLDLSNNKISGQVLRSEIFQGPYEDGIYREIALETLNLGYNEIHSLD 506
+++ +F++ L +LDLSNN IS +I G +E+ Y L+ LNLG N+I ++
Sbjct: 84 LKNTSFQDYQYLKWLDLSNNDIS------DIQDGTFENLRY----LKQLNLGENKIRTVS 133
Query: 507 RYLFKYTPNLTRLYLNNNPIE 569
+FK +L +L L N ++
Sbjct: 134 ASMFKGLVSLEKLDLRFNDLK 154
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 456 IALETLNLGYNEIHSLDRYLFKYTPNLTRLYLNNNPI 566
++LE L++ +NEI D P L L++NNN +
Sbjct: 215 MSLEFLDVSFNEIRHFDEESLACLPLLEVLHINNNSL 251
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 42.3 bits (95), Expect = 3e-04
Identities = 34/130 (26%), Positives = 65/130 (50%)
Frame = +3
Query: 180 NWPEQINNISKDGHVLVTFFNNSITNITQLSPIPGNRIAISFKSNRVIEIEDDAFRNIPR 359
N+P Q++ +S +++ T +N+ N+T L +++ +NR+ + FR++
Sbjct: 65 NFPMQVSLLSLYNNLISTIHSNAFRNLTALR-------SLNLGANRLSVLPRSVFRDLAS 117
Query: 360 LVYLDLSNNKISGQVLRSEIFQGPYEDGIYREIALETLNLGYNEIHSLDRYLFKYTPNLT 539
L LDLS N++S L + F+G +L+ L L +N + ++ F L
Sbjct: 118 LRSLDLSANRLSS--LPEDTFEG--------LSSLQDLFLDFNRLRAIPETTFHGLAALQ 167
Query: 540 RLYLNNNPIE 569
RL L+NN ++
Sbjct: 168 RLRLHNNNLK 177
Score = 32.7 bits (71), Expect = 0.22
Identities = 26/90 (28%), Positives = 43/90 (47%)
Frame = +3
Query: 294 AISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRSEIFQGPYEDGIYREIALETL 473
++ +N + IE FRN+ L L L+NN I+ L +F R +L+ L
Sbjct: 192 SLQLNNNLLTRIEPGTFRNLRGLEILYLNNNNIT--ELDQRLFT--------RTPSLKLL 241
Query: 474 NLGYNEIHSLDRYLFKYTPNLTRLYLNNNP 563
+ +N + +L R LF ++ L+NNP
Sbjct: 242 FVSFNSLATLPRGLFYSLSTDAKVSLHNNP 271
Score = 28.7 bits (61), Expect = 3.6
Identities = 24/85 (28%), Positives = 37/85 (43%)
Frame = +3
Query: 312 NRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRSEIFQGPYEDGIYREIALETLNLGYNE 491
NR+ I + F + L L L NN + + QG ++L++L L N
Sbjct: 150 NRLRAIPETTFHGLAALQRLRLHNNNL--KTFSERTLQGT--------LSLKSLQLNNNL 199
Query: 492 IHSLDRYLFKYTPNLTRLYLNNNPI 566
+ ++ F+ L LYLNNN I
Sbjct: 200 LTRIEPGTFRNLRGLEILYLNNNNI 224
>SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 825
Score = 36.3 bits (80), Expect = 0.018
Identities = 28/90 (31%), Positives = 44/90 (48%)
Frame = +3
Query: 297 ISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRSEIFQGPYEDGIYREIALETLN 476
++ +NR+ I +F ++ L LDLSNN IS V E GP+ G+ L +L
Sbjct: 161 LNLANNRIYHISQGSFSDLRSLEGLDLSNNDISWTV---EEMNGPFR-GLTN---LASLR 213
Query: 477 LGYNEIHSLDRYLFKYTPNLTRLYLNNNPI 566
L N I ++ F N+ L+LN + +
Sbjct: 214 LDGNRITAIAATAFLGLENIKYLWLNTSQL 243
Score = 31.1 bits (67), Expect = 0.67
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Frame = +3
Query: 297 ISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRSEIFQGPYEDGIYREIALETLN 476
++ + NR+ I+D F+++ L L+L+NN+I I QG + D R +LE L+
Sbjct: 137 LNLERNRLSHIQDTTFKHLLALKVLNLANNRI------YHISQGSFSD--LR--SLEGLD 186
Query: 477 LGYNEIHSLDRYL---FKYTPNLTRLYLNNNPI 566
L N+I + F+ NL L L+ N I
Sbjct: 187 LSNNDISWTVEEMNGPFRGLTNLASLRLDGNRI 219
>SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)
Length = 2996
Score = 36.3 bits (80), Expect = 0.018
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Frame = +3
Query: 297 ISFKSNRVIEIEDDAFRNIP------RLVYLDLSNNKISGQVLRSEIFQGPYEDGIYREI 458
I F+ N + I ++AF+N+ L L L NNKI Q + S+IF G G
Sbjct: 540 IRFQYNSITSIAENAFQNVKVGQIGSGLATLHLQNNKI--QAITSKIF-GNSGSGS---- 592
Query: 459 ALETLNLGYNEIHSLDRYLFKYTPNLTRLYLNNNPI 566
++ L+L YNEI +L F + ++ L NN +
Sbjct: 593 SIRILDLSYNEIRTLKEDAFAGLSSSYKVMLRNNKL 628
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Frame = +3
Query: 240 NNSITNIT--QLSPIPGNR---IAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKIS 395
NN I I+ L P NR + ++ +N + I +AF + L LDL +NK+S
Sbjct: 142 NNQIDRISYPNLEPFFQNRSQLVHLNLSNNAIESIASEAFSQLIHLKVLDLRHNKLS 198
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 462 LETLNLGYNEIHSLDRYLFKYTPNLTRLYLNNNPIEI 572
L L L N I L + LFKY L L ++NN I++
Sbjct: 665 LRDLFLQNNNITELGKDLFKYNTVLGTLNIDNNAIQV 701
>SB_22441| Best HMM Match : LRR_1 (HMM E-Value=1.8e-19)
Length = 261
Score = 34.7 bits (76), Expect = 0.054
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Frame = +3
Query: 246 SITNITQLSPIPGNRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRSEIFQ 425
++T I P ++ S+ NR+ + +F P L +L + NN F
Sbjct: 50 TLTAIPTTFPSTLGKLRASY--NRITNLTRSSFAGYPYLKWLSVENN-----------FM 96
Query: 426 GPYEDGIY-REIALETLNLGYNEIHSLDRYLFKYTPNLTRLYLNNNPI 566
E+G + R+ L+ L LGYN++ + R + +L RL L+ N I
Sbjct: 97 EVIENGTFLRQALLDELYLGYNKLERITRGTLEGLRDLQRLRLSKNTI 144
>SB_52093| Best HMM Match : LRR_1 (HMM E-Value=1.3e-05)
Length = 252
Score = 33.5 bits (73), Expect = 0.13
Identities = 31/77 (40%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +3
Query: 339 AFRNIPRLVYLDLSNNKISGQVLRSEIFQGPYEDGIYREIALETLNLGYNEIHSL-DRYL 515
A ++ RL LDLS N I Q L+ G+ LETLNL YN I L D
Sbjct: 43 ALKSFTRLKNLDLSRNAI--QSLQ----------GVESLQLLETLNLYYNNISYLQDLSA 90
Query: 516 FKYTPNLTRLYLNNNPI 566
KY NL L L NP+
Sbjct: 91 LKYLTNLKELDLRLNPV 107
>SB_57674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 424
Score = 32.7 bits (71), Expect = 0.22
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Frame = +3
Query: 297 ISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRSEIFQGPYEDGIYREIALETLN 476
+S + + +IE + + + + LDLSNNK+ L+ ++F +L LN
Sbjct: 30 LSLQGQGLSQIESEILQQLTAIEELDLSNNKLVKLQLQ-DVFLP----------SLTKLN 78
Query: 477 LGYNEIHSLDRYLFKYTPNLTRLYLNNNP-IEI 572
L N++ +L+ F PNL L + NNP IE+
Sbjct: 79 LANNQLATLEG--FTAFPNLVDLNITNNPKIEV 109
>SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31)
Length = 870
Score = 32.3 bits (70), Expect = 0.29
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +3
Query: 243 NSITNITQLSPIPGNRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKI 392
N I N++Q P G+ +S K N + I F N+ + +DLSNN+I
Sbjct: 271 NQIRNLSQY-PFTGHLQKLSIKGNGLRVIGGSCFSNLSGVNIIDLSNNEI 319
>SB_51747| Best HMM Match : LRR_1 (HMM E-Value=2.5e-16)
Length = 288
Score = 31.1 bits (67), Expect = 0.67
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +3
Query: 459 ALETLNLGYNEIHSLDRYLFKYTPNLTRLYLNNNPIE 569
ALE+L+L +NE SLD P+LT+L L++N I+
Sbjct: 104 ALESLDLSFNEFESLDLQEVD-CPSLTQLDLSHNSIQ 139
>SB_22518| Best HMM Match : DUF847 (HMM E-Value=1.10001e-40)
Length = 598
Score = 30.7 bits (66), Expect = 0.88
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 364 SIWISAIIKFQVKFS--GVRYSKDLTKMGSTVRLLWRHSILV 483
S+++ + F++ FS G YS LT G+T+ W H LV
Sbjct: 16 SVYMDSSANFRIDFSSGGSNYSSPLTSSGATILNNWTHVALV 57
>SB_14633| Best HMM Match : LRR_1 (HMM E-Value=3.4e-12)
Length = 446
Score = 30.7 bits (66), Expect = 0.88
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 291 IAISFKSNRVIEIEDDAFRNIPRLVYLDLSNN 386
I +S +N++ I + F N+ L+YLDLS+N
Sbjct: 63 IVLSLSNNKISVIPNQLFINLIDLIYLDLSDN 94
>SB_35110| Best HMM Match : LRR_1 (HMM E-Value=3.9e-09)
Length = 546
Score = 30.3 bits (65), Expect = 1.2
Identities = 26/77 (33%), Positives = 33/77 (42%)
Frame = +3
Query: 336 DAFRNIPRLVYLDLSNNKISGQVLRSEIFQGPYEDGIYREIALETLNLGYNEIHSLDRYL 515
DAF+N L L++ N ISG I Y+ G LE L+L YN + D
Sbjct: 55 DAFKNFISLRELEMPLNNISG-----NIHLETYDFG-----HLEKLDLSYNRLTGADILA 104
Query: 516 FKYTPNLTRLYLNNNPI 566
NL L+L N I
Sbjct: 105 LGLMENLRTLHLTGNEI 121
>SB_8041| Best HMM Match : LRR_1 (HMM E-Value=1.2e-06)
Length = 192
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +3
Query: 459 ALETLNLGYNEIHSLDRYLFKYTPNLTRLYLNNNPI 566
ALE L+L +NE+ ++D L + PNL L L N I
Sbjct: 88 ALELLDLSFNELSTIDPVLLDF-PNLKILCLQGNNI 122
>SB_52582| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-39)
Length = 587
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 300 SFKSNRVIEIEDDAFRNIPRLVYLDLSNN 386
+ + NR+ E+ D+ F+ + L LDLS N
Sbjct: 12 TLEGNRITEVNDNTFKGVKSLETLDLSEN 40
>SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1152
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 438 DGIYREIALETLNLGYNEIHSLDRYLFKYTPNLTRLYLNNNPI 566
+G+ R L+ LNL N + LD + + P L L L NN I
Sbjct: 1088 EGLVRNPKLKWLNLSSNNLTILDTGMLERLPELRYLSLENNNI 1130
>SB_19770| Best HMM Match : LRR_1 (HMM E-Value=1.7e-06)
Length = 239
Score = 29.1 bits (62), Expect = 2.7
Identities = 26/98 (26%), Positives = 48/98 (48%)
Frame = +3
Query: 276 IPGNRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRSEIFQGPYEDGIYRE 455
IP + + ++ E++ +F ++ +L L L+NNKI S IF+G I
Sbjct: 45 IPRTVGTLIVEDGQITELKKTSFLDLTKLRGLYLTNNKI------SPIFEGT----ITTC 94
Query: 456 IALETLNLGYNEIHSLDRYLFKYTPNLTRLYLNNNPIE 569
+ L T++L N + + ++ F +L + L+ N IE
Sbjct: 95 VRLMTVDLSRNLLKRVFKHYFSGLEDLKSVNLSRNVIE 132
>SB_29302| Best HMM Match : LRR_1 (HMM E-Value=1.1e-11)
Length = 606
Score = 28.7 bits (61), Expect = 3.6
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +3
Query: 390 ISGQVLRSEIFQGPYEDGIYREIALETLNLGYN----EIHSLDRYLFKYTPNLTRLYLNN 557
+SG L E + P I + L LNL +N E S + NLTRL LN+
Sbjct: 285 LSGNSLTDEAIE-PLMSSILLKCRLAELNLSHNILCDEFASSMGQVLLTNRNLTRLLLNS 343
Query: 558 NPIEI 572
N +E+
Sbjct: 344 NHLEV 348
>SB_53214| Best HMM Match : LRR_1 (HMM E-Value=7.4e-06)
Length = 298
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 312 NRVIEIEDDAFRNIPRLVYLDLSNNKISG 398
N++ ++ DD F+N+ LD+ NK++G
Sbjct: 179 NQIKKVADDVFQNVSNGFKLDIGRNKMNG 207
>SB_35875| Best HMM Match : RVT_1 (HMM E-Value=5.2e-24)
Length = 1423
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 270 SPIPGNRIAISFKSNRVIEIEDDAFRNIPRLVYL 371
SP+P A+ +SNR+ +I + ++P LV++
Sbjct: 683 SPLPKQSAALMLQSNRISQIGEYDITSLPHLVHI 716
>SB_10898| Best HMM Match : Galactosyl_T (HMM E-Value=1.9e-22)
Length = 301
Score = 28.3 bits (60), Expect = 4.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 294 AISFKSNRVIEIEDDAFRNIPRLV 365
A+ FK +++++DD + +IPR V
Sbjct: 171 ALQFKPKYILKVDDDVYAHIPRFV 194
>SB_20569| Best HMM Match : LRR_1 (HMM E-Value=1.1e-27)
Length = 309
Score = 28.3 bits (60), Expect = 4.7
Identities = 21/92 (22%), Positives = 44/92 (47%)
Frame = +3
Query: 297 ISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRSEIFQGPYEDGIYREIALETLN 476
+S + N + + + F+ +P+L +LDL+ NK + + + ++LE L+
Sbjct: 188 LSLRENHLSSLPSEFFK-LPKLAHLDLNMNKFE-----------EFPENLIGLVSLECLS 235
Query: 477 LGYNEIHSLDRYLFKYTPNLTRLYLNNNPIEI 572
L N I SL + P L ++ + +N + +
Sbjct: 236 LRGNCIKSLADNCVEGLPKLCKVDIRDNQVTL 267
>SB_11265| Best HMM Match : LRR_1 (HMM E-Value=0.23)
Length = 174
Score = 28.3 bits (60), Expect = 4.7
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 243 NSITNITQLSPIPGNRIAISFK--SNRVIEIEDDAFRNIPRLVYLDLSNNKIS 395
N+ITN+T + + G + IS + NR+ IE AF L L L NKI+
Sbjct: 49 NAITNVTA-ADMKGKEMLISLQLNDNRISYIETGAFNACIELRSLLLGQNKIT 100
>SB_51625| Best HMM Match : LRR_1 (HMM E-Value=2.7e-10)
Length = 212
Score = 27.9 bits (59), Expect = 6.2
Identities = 24/74 (32%), Positives = 35/74 (47%)
Frame = +3
Query: 297 ISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRSEIFQGPYEDGIYREIALETLN 476
++ + N + EIE AFRN+ L L L N+ G GP + R AL+ L+
Sbjct: 140 LNLRRNGIKEIEFGAFRNLTALESLYLFRNRFFG--------IGP--NAFERLTALQVLS 189
Query: 477 LGYNEIHSLDRYLF 518
L N + L R +F
Sbjct: 190 LVDNRLTGLTRSMF 203
>SB_6204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 281
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Frame = +3
Query: 450 REIALETLNLGYNEIH-----SLDRYLFKYTPNLTRLYLNNNPI 566
R LE LNL YN I ++ L Y NL +L L NN I
Sbjct: 166 RNTPLEMLNLAYNRIEDDGAVAIAEALAAYNTNLIKLVLCNNNI 209
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,570,574
Number of Sequences: 59808
Number of extensions: 323675
Number of successful extensions: 965
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -