Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11i04f
(622 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B f... 33 0.12
At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B f... 32 0.27
At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B f... 32 0.27
At5g02350.1 68418.m00158 DC1 domain-containing protein contains ... 30 1.4
At2g13900.1 68415.m01542 DC1 domain-containing protein contains ... 30 1.4
At5g41090.1 68418.m04995 no apical meristem (NAM) family protein... 29 2.5
At4g21326.1 68417.m03081 subtilase family protein contains simil... 28 4.3
At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /... 27 7.6
>At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 475
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +3
Query: 315 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 494
+V V ++ + + +A + S IA +LKN KL +N + + L +A +
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453
Query: 495 NLEGKVARITG 527
+ GK+ + G
Sbjct: 454 TISGKIGKEVG 464
>At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 488
Score = 32.3 bits (70), Expect = 0.27
Identities = 16/68 (23%), Positives = 32/68 (47%)
Frame = +3
Query: 315 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 494
+V V ++ + + +A + S IA +LKN KL +N + + L +A +
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453
Query: 495 NLEGKVAR 518
+ GK+ +
Sbjct: 454 TISGKIGK 461
>At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 550
Score = 32.3 bits (70), Expect = 0.27
Identities = 16/68 (23%), Positives = 32/68 (47%)
Frame = +3
Query: 315 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 494
+V V ++ + + +A + S IA +LKN KL +N + + L +A +
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453
Query: 495 NLEGKVAR 518
+ GK+ +
Sbjct: 454 TISGKIGK 461
>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 651
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +2
Query: 233 NNTRSQWHCYDDDQPYC*RRVFKKWQ---L*RYRC 328
NNTRS+ C+ D+ C +V KWQ YRC
Sbjct: 614 NNTRSRPFCHHHDEDRCPYKVIFKWQDMTFCSYRC 648
>At2g13900.1 68415.m01542 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 661
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 233 NNTRSQWHCYDDDQPYC*RRVFKKWQ 310
NNTRS+ C+ D+ C +V KWQ
Sbjct: 622 NNTRSRPFCHHHDEDRCPHKVVFKWQ 647
>At5g41090.1 68418.m04995 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to unknown protein (emb|CAB88055.1)
Length = 212
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 90 QNLERFGSLNKYYYYSNAQRNPITLTEDH---FPTG--NDPAAPFNNNWDIVVIIH 242
++L +GS +Y+Y +N +T T+ + PTG D P N ++V I H
Sbjct: 53 RDLPGYGSEEHWYFYCKKPKNQVTRTKSYNLWIPTGEKTDVLDPKKNGGELVGIKH 108
>At4g21326.1 68417.m03081 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 from [Oryza
sativa]
Length = 690
Score = 28.3 bits (60), Expect = 4.3
Identities = 24/86 (27%), Positives = 34/86 (39%)
Frame = +3
Query: 249 SGTATTTINPIVKDAFLRSGNYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKL 428
S ATTTIN RSG+Y +V F Y + + SS + +K+
Sbjct: 357 SALATTTINKAAGLIVARSGDYQSDIVYNQPFIYVDYEVGAKILRYIRSSSS---PTIKI 413
Query: 429 PLNKVHIVGFNLGAHVAGVTGRNLEG 506
K +VG + V G + R G
Sbjct: 414 STGKT-LVGRPIATQVCGFSSRGPNG 438
>At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /
gibberellin-responsive modulator identical to GB:Y11336,
member of SCARECROW family
Length = 587
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 516 RITGLDPSARDWENNVLRLGTNDAQYVEVIHTD 614
R+TG+ P A D +++ +G AQ E IH +
Sbjct: 354 RLTGIGPPAPDNSDHLHEVGCKLAQLAEAIHVE 386
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,672,285
Number of Sequences: 28952
Number of extensions: 284363
Number of successful extensions: 673
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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