Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i03f
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   1.5  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    27   2.0  
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    26   3.5  
SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c...    26   3.5  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.1  

>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 11/52 (21%)
 Frame = +2

Query: 431 VVNHLEQMTTLLELEA--------RAREINATMAEV---SCLEHLLGENLLD 553
           ++NHL+  T +L L+A          RE+N+++ E+    CL  LL  N+ +
Sbjct: 541 IINHLKDKTEMLSLDAVMTLILGKNTREVNSSIEELKITDCLSFLLEHNIFN 592


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +1

Query: 166 QLLRIM*PV---VYILLHTASSLLDSLTTNVIQNELAIKLIVVGEQA 297
           Q++  M PV   + +LLH  + L+D L  + ++N L+  +++ G  A
Sbjct: 416 QVISRMPPVSLEMQVLLHKQTQLIDLLLESSLRNSLSFPMLIAGLNA 462


>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 479 RAREINATMAEVSCLEHLLGEN 544
           R+  I AT+  +SC++ L+GEN
Sbjct: 193 RSYNIKATVRTISCVDLLIGEN 214


>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 404 QHLHDDVLGVVNHLEQMTTLLELEARAREINATMAEV-SCLEHL-LGENLLDKLYEW 568
           Q +  DVL  ++++E +    E E   +EIN  ++ V    +HL +G  +L  L  W
Sbjct: 125 QSIGPDVLNEIHNIEHLPKKDESEDSGKEINNMVSAVGGTFDHLHVGHKVLLTLTAW 181


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -2

Query: 540 SPSKCSRQDTSAIVALISRALASSSKSVVICSKWFTTPRTSSW 412
           S S      +S + +  + A++SSS S  + S  FT+P +SS+
Sbjct: 37  SSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSFTSPASSSF 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,316,104
Number of Sequences: 5004
Number of extensions: 43473
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)