Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i03f
         (583 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929...    29   2.0  
10_06_0107 + 10840633-10841200,10841364-10841488,10856838-10857380     29   2.7  
12_02_0384 + 18409831-18409843,18410378-18410471,18410614-184107...    29   3.6  
11_06_0027 + 19363678-19363698,19364442-19364484,19366240-193662...    28   6.2  
06_03_1208 - 28422941-28423139,28423854-28424434,28424705-284250...    28   6.2  

>01_01_1166 +
           9287840-9288040,9289752-9289799,9292166-9292282,
           9293018-9293700,9295214-9297190,9298330-9298441,
           9299848-9299904
          Length = 1064

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +2

Query: 434 VNHLEQMTTLLELEARAREINATMAEVSCLEHLL 535
           V +L+++ TL       RE+ AT+ ++ CL+HLL
Sbjct: 698 VGNLKELLTLDVRSTYIRELPATITQLRCLKHLL 731


>10_06_0107 + 10840633-10841200,10841364-10841488,10856838-10857380
          Length = 411

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +2

Query: 317 RIDYEPHACFKSFWKHWQQAYG--IIVKSQPQHLHDDVLGVVNHLEQMTTL 463
           RID  PH C  S   +W +  G   I+K   + L D  + V+  L ++T L
Sbjct: 302 RIDLSPHVCTFSTLPNWIRELGSLCILKIAVRKLGDGDMDVLGGLSELTVL 352


>12_02_0384 +
           18409831-18409843,18410378-18410471,18410614-18410734,
           18411635-18412543,18412772-18413211,18413481-18414516
          Length = 870

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 341 CFKSFWKHWQQAYGIIVKSQPQHLHDDVLGVVNHLEQMTTLLEL 472
           CF   W   Q+     VK + QHL  D+  +   L +M  L+E+
Sbjct: 67  CFAFSWSVSQKPQNDFVKEEIQHLQSDLWQLQTTLPKMRNLVEI 110


>11_06_0027 +
           19363678-19363698,19364442-19364484,19366240-19366276,
           19366359-19366602,19366749-19366765,19366901-19366986,
           19367347-19367378,19367455-19367615,19367722-19367818,
           19367894-19368085,19368172-19368233,19368302-19368448,
           19368776-19369589
          Length = 650

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 428 GVVNHLEQMTTLLELEARAREINATMAEVSCLEHLLGENLLDKLYEWAIC 577
           G++++ E+  TLL      RE         CL+H++ EN+ D L     C
Sbjct: 166 GMLSNSEEDFTLLMFNIPHREQVVAATLEDCLDHIVEENVHDSLSRCESC 215


>06_03_1208 - 28422941-28423139,28423854-28424434,28424705-28425078,
            28425235-28425339,28425902-28425970,28426084-28426156,
            28426395-28426478,28426616-28426648,28426731-28426790,
            28427535-28427627,28427851-28427970,28428804-28428886,
            28428887-28429007,28429114-28429164,28429245-28429333,
            28429429-28429561,28430220-28430354,28430581-28430952,
            28431679-28431796,28431883-28431998,28432131-28432442
          Length = 1106

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +2

Query: 308  LDPRIDYEPHACFKSFWKHWQQAYGIIVKSQPQHLHDDVLGVVNHLEQMTTLLE 469
            L+P I Y P  C  S  + W +A+  + +   Q++H  V   +  L +   LL+
Sbjct: 988  LEPVISYLP-LCPNSGTEEWNEAFASLSELLTQYIHQKVESDIEELHKCFRLLK 1040


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,614,193
Number of Sequences: 37544
Number of extensions: 268131
Number of successful extensions: 637
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)