Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i03f
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-6|AAB53828.1|  873|Caenorhabditis elegans Hypothetical pr...    32   0.26 
Z70213-2|CAA94171.1|  304|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z69884-4|CAA93751.2|  913|Caenorhabditis elegans Hypothetical pr...    27   7.4  

>U00048-6|AAB53828.1|  873|Caenorhabditis elegans Hypothetical
           protein C05D11.8 protein.
          Length = 873

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 20/86 (23%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
 Frame = +2

Query: 329 EPHACFKSFWKHWQQAYGIIVK--SQPQH--LHDDVLGVVNHLEQMTTLLELEARAREIN 496
           +P    + F   W     I+ +  S P+H  ++D+++ ++ ++  M TLL LEA ++   
Sbjct: 22  DPTVWEQLFETKWSVVSNILERKLSDPEHKVVYDELMSLLENMTNMCTLLMLEANSQP-E 80

Query: 497 ATMAEVSCLEHLLGENLLDKLYEWAI 574
             +  +  L+    E +L+++ +W+I
Sbjct: 81  PIIGPI--LDKFFTEQILERVLDWSI 104


>Z70213-2|CAA94171.1|  304|Caenorhabditis elegans Hypothetical
           protein ZK930.2 protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 434 VNHLEQMT--TLLELEARAREINATMAEVSCLEHLLGENL 547
           +N LE +T  +  ELE R  +I+  M EV+ +   + ENL
Sbjct: 135 INTLEDITKSSKTELEKRKMKISVAMGEVARMRGFINENL 174


>Z69884-4|CAA93751.2|  913|Caenorhabditis elegans Hypothetical
           protein F31F6.5 protein.
          Length = 913

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 504 WLKYLALSICWARTFSISSTNGPF 575
           WLKY   S  WA    I+ T+G F
Sbjct: 671 WLKYTGGSTQWASNLKINKTDGSF 694


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,693,115
Number of Sequences: 27780
Number of extensions: 240410
Number of successful extensions: 576
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)