Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i03f
         (583 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38340.1 68418.m04627 disease resistance protein (TIR-NBS-LRR...    29   1.7  
At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR...    28   5.2  
At3g59950.2 68416.m06690 autophagy 4b (APG4b) identical to autop...    27   9.1  
At3g59950.1 68416.m06691 autophagy 4b (APG4b) identical to autop...    27   9.1  
At2g19260.1 68415.m02248 ELM2 domain-containing protein / PHD fi...    27   9.1  

>At5g38340.1 68418.m04627 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1059

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 383 IIVKSQPQHLHDDVLGVVNHLEQMTTLLELEA 478
           I+ +S P    DD++G+  H+E+M +LL L +
Sbjct: 218 ILNRSSPSRDFDDLIGMEAHMEKMKSLLSLHS 249


>At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 896

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +2

Query: 395 SQPQHLHDDVLGVVNHLEQMTTLLELEA 478
           S P    DD++G+ +H+E+M  LL++++
Sbjct: 228 STPSRDFDDLIGMGDHMEKMKPLLDIDS 255


>At3g59950.2 68416.m06690 autophagy 4b (APG4b) identical to
           autophagy 4b [Arabidopsis thaliana]
           gi|19912145|dbj|BAB88384
          Length = 471

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 7/41 (17%)
 Frame = -2

Query: 546 RFSPSKCS------RQDTSAIVALISRALASSSKS-VVICS 445
           RF PSKCS      ++D S+  +L+S + +S +KS + +CS
Sbjct: 7   RFVPSKCSSSSTSEKRDISSPTSLVSDSASSDNKSNLTLCS 47


>At3g59950.1 68416.m06691 autophagy 4b (APG4b) identical to
           autophagy 4b [Arabidopsis thaliana]
           gi|19912145|dbj|BAB88384
          Length = 477

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 7/41 (17%)
 Frame = -2

Query: 546 RFSPSKCS------RQDTSAIVALISRALASSSKS-VVICS 445
           RF PSKCS      ++D S+  +L+S + +S +KS + +CS
Sbjct: 7   RFVPSKCSSSSTSEKRDISSPTSLVSDSASSDNKSNLTLCS 47


>At2g19260.1 68415.m02248 ELM2 domain-containing protein / PHD
           finger family protein contains Pfam profiles: PF01448
           ELM2 domain, PF00628 PHD-finger
          Length = 631

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = -2

Query: 534 SKCSRQDTSAIVALISRALASSSKSVVICSKWFTTPR----TSSWRCWGC 397
           +K S++  SA+  L  R       + VIC KW   PR    T  W C+ C
Sbjct: 529 AKNSKKQCSAVNWLQCR---EEDTNGVICGKWRRAPRSEVQTKDWECFCC 575


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,998,261
Number of Sequences: 28952
Number of extensions: 222406
Number of successful extensions: 536
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)