Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11i02f
(624 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48334-1|CAA88308.1| 214|Caenorhabditis elegans Hypothetical pr... 316 1e-86
Z66511-7|CAD57693.1| 567|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z81055-1|CAB02889.1| 618|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z46791-1|CAA86761.1| 476|Caenorhabditis elegans Hypothetical pr... 28 4.7
AF099919-10|AAC68792.1| 205|Caenorhabditis elegans Max-like pro... 28 4.7
U50199-4|AAA91264.2| 142|Caenorhabditis elegans Abnormal cell l... 27 8.2
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 27 8.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 27 8.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 27 8.2
>Z48334-1|CAA88308.1| 214|Caenorhabditis elegans Hypothetical
protein F10B5.1 protein.
Length = 214
Score = 316 bits (775), Expect = 1e-86
Identities = 143/194 (73%), Positives = 162/194 (83%)
Frame = +3
Query: 39 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 218
MGRRPARCYRY KNKPYPKSRFCRGVPD KIRIFDLG KRA VD FP CVH++S+E E L
Sbjct: 1 MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHL 60
Query: 219 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 398
SSEALEA RIC NKY+VKNCGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+G
Sbjct: 61 SSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYG 120
Query: 399 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDE 578
KPQG VARV IG + S+R + IEA RRAKFKFPGRQ I S+KWGFTK++R++
Sbjct: 121 KPQGLVARVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFTKWDRED 180
Query: 579 FEKLREEGRLANDG 620
+E++R EGRL +DG
Sbjct: 181 YERMRAEGRLRSDG 194
>Z66511-7|CAD57693.1| 567|Caenorhabditis elegans Hypothetical
protein F07A11.6d protein.
Length = 567
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -2
Query: 473 LPPVTRAHGHDGLSNANTCYSTLRLAKRTTHPSLEPISSSA 351
+P VT A + LSN T ST LA T +L P+S A
Sbjct: 46 VPVVTTASTPNPLSNLETLLSTASLANLATGGALNPLSMLA 86
>Z81055-1|CAB02889.1| 618|Caenorhabditis elegans Hypothetical
protein F01G10.1 protein.
Length = 618
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +3
Query: 384 RGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIE--ALRRAKFKFPGRQK 530
R GKP +A+ G+ I + + D W + + + K +F G QK
Sbjct: 228 RSTKGKPTAIIAKTLKGKGIEGIENEDNWHGKPVPEGTVNAIKARFHGSQK 278
>Z46791-1|CAA86761.1| 476|Caenorhabditis elegans Hypothetical
protein C09G5.2 protein.
Length = 476
Score = 28.3 bits (60), Expect = 4.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 403 GLPNAPRIPVWSLSAPA 353
G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248
>AF099919-10|AAC68792.1| 205|Caenorhabditis elegans Max-like
protein 2 protein.
Length = 205
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 99 RFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 245
R C + K I D K+ A ++ + +++ EYEQ++S +AG+
Sbjct: 93 RACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQ 141
>U50199-4|AAA91264.2| 142|Caenorhabditis elegans Abnormal cell
lineage protein 32 protein.
Length = 142
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 424 FALDSPSCPCALVTGGRHRSSRLCAVPSSSSPDVKR 531
F+LDSP+ P +L GG + C + SP + R
Sbjct: 36 FSLDSPNYPDSLSNGGGKDDKKKCRRYKTPSPQLLR 71
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -2
Query: 161 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 60
RS + IE +D+ + TP +P+ +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -2
Query: 161 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 60
RS + IE +D+ + TP +P+ +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -2
Query: 161 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 60
RS + IE +D+ + TP +P+ +F+F VPVA
Sbjct: 176 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 211
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,910,630
Number of Sequences: 27780
Number of extensions: 366512
Number of successful extensions: 1039
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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