Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11i01r
(641 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 160 1e-39
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 159 1e-39
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 154 7e-38
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 109 2e-24
02_04_0366 - 22389591-22390527,22391296-22391429,22391762-223918... 30 1.8
11_06_0754 - 26935647-26937780,26940890-26941827 29 3.1
10_08_0943 + 21728294-21728675,21728767-21728840,21729469-217304... 29 3.1
02_05_0342 - 28128670-28129101,28129484-28129523,28129846-281299... 29 3.1
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 28 5.5
03_06_0125 + 31850858-31850905,31851032-31851109,31851221-318513... 28 5.5
06_03_1274 + 28897491-28897707,28897804-28897935,28898029-288980... 28 7.2
06_03_0461 - 21026440-21026617,21027918-21028127,21028920-21029326 28 7.2
05_01_0066 - 465526-466107,466541-466741 28 7.2
05_06_0044 - 25150322-25151260 27 9.6
05_01_0214 - 1615519-1616775 27 9.6
04_01_0553 - 7128786-7128998,7129087-7129242,7129577-7130380 27 9.6
01_06_1651 + 38909410-38909625,38909713-38910181,38910265-38910899 27 9.6
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 160 bits (388), Expect = 1e-39
Identities = 78/150 (52%), Positives = 102/150 (68%), Gaps = 3/150 (2%)
Frame = -2
Query: 514 AVAHLVSGKIT-GTIVFTETSEG-LHITGTITGLPAGRYGFHVHALGDTST-CDAAGPHF 344
AV L S +I GTI F + +G +TG+++GL G +GFH+HALGDT+ C + GPH+
Sbjct: 122 AVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHY 181
Query: 343 DPEGNNHGGPDHNVRHVGDLGNVVFVGNQEPVATVNFVDRLITLRGKNNIIGRTLVLHEQ 164
+P G HG P+ RH GDLGNV ++ VA ++ VD I L G N+IIGR +V+H
Sbjct: 182 NPAGKEHGAPEDETRHAGDLGNVT--AGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHAD 239
Query: 163 EDDLGLGGHELSLTTGNAGPRVACGVIGIR 74
DDLG GGHELS TTGNAG RVACG+IG++
Sbjct: 240 PDDLGKGGHELSKTTGNAGGRVACGIIGLQ 269
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 159 bits (387), Expect = 1e-39
Identities = 79/150 (52%), Positives = 101/150 (67%), Gaps = 3/150 (2%)
Frame = -2
Query: 514 AVAHLVSGK-ITGTIVFTETSEG-LHITGTITGLPAGRYGFHVHALGDTST-CDAAGPHF 344
AVA L S + + GTI F++ +G +TG+++GL G +GFHVHALGDT+ C + GPHF
Sbjct: 4 AVAVLASSEGVKGTIFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHF 63
Query: 343 DPEGNNHGGPDHNVRHVGDLGNVVFVGNQEPVATVNFVDRLITLRGKNNIIGRTLVLHEQ 164
+P G HG P RH GDLGN+ + VA VN D I L G ++IIGR +V+H
Sbjct: 64 NPTGKEHGAPQDENRHAGDLGNIT--AGADGVANVNVSDSQIPLTGAHSIIGRAVVVHAD 121
Query: 163 EDDLGLGGHELSLTTGNAGPRVACGVIGIR 74
DDLG GGHELS TTGNAG RVACG+IG++
Sbjct: 122 PDDLGKGGHELSKTTGNAGGRVACGIIGLQ 151
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 154 bits (373), Expect = 7e-38
Identities = 70/142 (49%), Positives = 94/142 (66%), Gaps = 2/142 (1%)
Frame = -2
Query: 496 SGKITGTIVFTETSEG-LHITGTITGLPAGRYGFHVHALGDTST-CDAAGPHFDPEGNNH 323
+ ++ G + T+ +G + +TGL G +GFH+H GDT+ C + GPHF+P H
Sbjct: 61 TSQVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTH 120
Query: 322 GGPDHNVRHVGDLGNVVFVGNQEPVATVNFVDRLITLRGKNNIIGRTLVLHEQEDDLGLG 143
G P+ VRH GDLGN+V N E VA VD+ I L G N+++GR V+HE EDDLG G
Sbjct: 121 GAPEDEVRHAGDLGNIV--ANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKG 178
Query: 142 GHELSLTTGNAGPRVACGVIGI 77
GHELSL+TGNAG R+ACGV+G+
Sbjct: 179 GHELSLSTGNAGGRLACGVVGL 200
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 109 bits (261), Expect = 2e-24
Identities = 50/111 (45%), Positives = 72/111 (64%), Gaps = 2/111 (1%)
Frame = -2
Query: 469 FTETSEGL-HITGTITGLPAGRYGFHVHALGDTST-CDAAGPHFDPEGNNHGGPDHNVRH 296
F + S G + G +TGL G +GFH+H+ GDT+ C++ GPHF+P +HG P + RH
Sbjct: 30 FQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGAPSDDERH 89
Query: 295 VGDLGNVVFVGNQEPVATVNFVDRLITLRGKNNIIGRTLVLHEQEDDLGLG 143
VGDLGN+ V N++ VA + D I+L G ++I+GR +V+H DDLG G
Sbjct: 90 VGDLGNI--VANKDGVADIFIKDLQISLSGPHSILGRAVVVHADSDDLGRG 138
>02_04_0366 -
22389591-22390527,22391296-22391429,22391762-22391816,
22392364-22393225,22393342-22393459,22393647-22393737,
22394627-22394670
Length = 746
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 216 LYVEKTTLLVVRLCCMNKKTISDWEDTSY 130
+YV + LL+V+ CC T+ DTSY
Sbjct: 373 VYVTRCALLIVQYCCCQPVTVKAEMDTSY 401
>11_06_0754 - 26935647-26937780,26940890-26941827
Length = 1023
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/84 (22%), Positives = 41/84 (48%)
Frame = +2
Query: 227 IHKVHCSYRLLVSNKNNISKITNVTYIVIWASMIVAFRVEVWPGGVTSARVSESMNMEPV 406
+H + S R + +K + + ++ +I W + A P G +S+RV + + +
Sbjct: 298 VHSLISSIRAHLQDKRYLIIVDDICFISTWDIIKCAL-----PDGTSSSRVLTTTQYDDL 352
Query: 407 SPGR*SGYSTRYMETFRSFSKNNS 478
+ GY T+Y+ +S S+++S
Sbjct: 353 AVQS-CGYDTKYVFKMKSLSQHDS 375
>10_08_0943 +
21728294-21728675,21728767-21728840,21729469-21730443,
21730617-21730683,21730765-21730827,21731001-21731064,
21731162-21731255,21731352-21731435,21731523-21731612,
21731708-21731735,21732117-21732596,21732679-21732740,
21732820-21732929,21733014-21733101,21733228-21733557,
21733782-21733904
Length = 1037
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +2
Query: 377 VSESMNMEPVSPGR*SGYSTRYMETFRSFSKNNSTRNFSRY*MGYSNSVLTVG 535
+ + +N+ P SP S +T METF SK + Y +LT G
Sbjct: 286 IEQDLNLRPSSPRNCSTKATDDMETFDVISKEAEALQYCSPNAQYPQKILTCG 338
>02_05_0342 -
28128670-28129101,28129484-28129523,28129846-28129958,
28129998-28130093,28130196-28130327,28130485-28130805
Length = 377
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 352 PHFDPEGNNHGGPDHNVRHVGDLGNV 275
PHF P+G+ DH V + DLGN+
Sbjct: 119 PHFYPDGDFQIACDHYVGNATDLGNI 144
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 430 ITGLPAGRYGFHVHALGDTS 371
++GL +GFHVHALG T+
Sbjct: 43 VSGLKPVLHGFHVHALGGTT 62
>03_06_0125 +
31850858-31850905,31851032-31851109,31851221-31851337,
31851346-31851642,31852498-31852509,31852737-31852822,
31853516-31853660,31853767-31853862,31854333-31854424,
31854696-31854797,31854891-31855037,31855116-31855266,
31855418-31855480,31855570-31855806,31856081-31856185,
31856263-31856376,31856459-31857037,31857279-31857286,
31857858-31858004,31858077-31858203
Length = 916
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +1
Query: 256 LGFQQKQHFQDHQRDVHCDLGLHDCCLQGRSVARRRHKCSCLREHEH 396
LG + DH C L L D C A RR C+C + H H
Sbjct: 858 LGVTHLTYSGDHHS---CQLSLVDECYAAAVAAARRAHCNCTKCHIH 901
>06_03_1274 +
28897491-28897707,28897804-28897935,28898029-28898096,
28898216-28898280,28898468-28898534,28898630-28898917,
28898995-28899102,28899236-28899487,28899918-28899997,
28900092-28900185,28900728-28900810,28901319-28901873,
28902085-28902616
Length = 846
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 199 NIIGRTLVLHEQEDDLGLGGHELSLTTGNA 110
NI+ RT+VLH E +G GG ++L+ A
Sbjct: 780 NIVIRTVVLHNGEASIGAGGAIVALSDPEA 809
>06_03_0461 - 21026440-21026617,21027918-21028127,21028920-21029326
Length = 264
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2
Query: 169 EQEDDLGLGGHELSLTTGNAGPRVA 95
E D+L G LS+ TGNAGP A
Sbjct: 43 ESSDELYCDGWRLSVETGNAGPWTA 67
>05_01_0066 - 465526-466107,466541-466741
Length = 260
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = -2
Query: 181 LVLHEQEDDLGLG-GHELS-LTTGNAGPRVACGVIGIRSPVVWNS 53
L +H Q D++ G ELS T G+ ++CG+ +R VVW++
Sbjct: 214 LNIHAQNDNVFSGCSLELSPFTRGSDEEEISCGLCKMRVKVVWST 258
>05_06_0044 - 25150322-25151260
Length = 312
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 352 PHFDPEGNNHGGPDHNVR 299
PH EG+ H PDH+VR
Sbjct: 96 PHLTEEGDFHVSPDHDVR 113
>05_01_0214 - 1615519-1616775
Length = 418
Score = 27.5 bits (58), Expect = 9.6
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = -2
Query: 514 AVAHLV--SGKITGTIVFTETSEGLHITGTITGLPAGRYGFHVHALGDTSTCDAAGPHFD 341
A+ L+ SG++ G+++F ++ GL + + L +G H H G H
Sbjct: 146 AIVRLINESGEVQGSLMFAVSAFGLFVNIIMAVLLGHDHG-HGHGHGHG--------HGH 196
Query: 340 PEGNNHGGPDHNVRHVGD 287
++HGG DH+ H D
Sbjct: 197 SHDHDHGGSDHDHHHHED 214
>04_01_0553 - 7128786-7128998,7129087-7129242,7129577-7130380
Length = 390
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +2
Query: 230 HKVHCSYRLLVSNKNNISKITNVTYIVIWASMIVAFRVEVW 352
+++H R L+++K+ ISKI +TY S ++ + W
Sbjct: 337 NQIHSKRRSLITSKSEISKIMKMTYEDDGVSDLIELLLRNW 377
>01_06_1651 + 38909410-38909625,38909713-38910181,38910265-38910899
Length = 439
Score = 27.5 bits (58), Expect = 9.6
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = -2
Query: 532 NGENRVAVAHLV--SGKITGTIVFTETSEGLHITGTITGLPAGRYGFHVHALGDTSTCDA 359
+G+ R + + V +G + GT F + + +GTIT LP G G G TST
Sbjct: 170 SGQPRTDLVYAVGPAGSLPGTNGFLAQHQYM-TSGTIT-LPTGTSGGG--GGGSTSTGGG 225
Query: 358 AGPHFDPEGNNHGGPDHNVRH 296
G +GN GG + +H
Sbjct: 226 GGGGDSDDGNEGGGGEGKGKH 246
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,499,512
Number of Sequences: 37544
Number of extensions: 364461
Number of successful extensions: 953
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -