Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11i01r
(641 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.) 149 1e-36
SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07) 80 2e-15
SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23) 31 0.80
SB_41218| Best HMM Match : zf-C2H2 (HMM E-Value=0.68) 29 2.4
SB_16952| Best HMM Match : AAA_5 (HMM E-Value=0.47) 29 2.4
SB_31762| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_41447| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_41915| Best HMM Match : F5_F8_type_C (HMM E-Value=9.1e-13) 27 9.8
>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 149 bits (362), Expect = 1e-36
Identities = 70/123 (56%), Positives = 89/123 (72%), Gaps = 1/123 (0%)
Frame = -2
Query: 442 ITGTITGLPAGRYGFHVHALGD-TSTCDAAGPHFDPEGNNHGGPDHNVRHVGDLGNVVFV 266
ITGTI GL AG +GFH+H GD T+ C +AGPHF+P HGGP RHVGDLGNVV
Sbjct: 30 ITGTIEGLKAGNHGFHIHVYGDNTNGCVSAGPHFNPFKKEHGGPSDENRHVGDLGNVV-- 87
Query: 265 GNQEPVATVNFVDRLITLRGKNNIIGRTLVLHEQEDDLGLGGHELSLTTGNAGPRVACGV 86
+ A ++ D L+TL G+++++GR++V+H EDDLG GGHE S TTG+AG R+ACGV
Sbjct: 88 AGDDGKACIDMTDALVTLVGEHSVVGRSVVVHADEDDLGRGGHEDSKTTGHAGGRLACGV 147
Query: 85 IGI 77
IGI
Sbjct: 148 IGI 150
>SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)
Length = 100
Score = 79.8 bits (188), Expect = 2e-15
Identities = 39/72 (54%), Positives = 50/72 (69%)
Frame = -2
Query: 298 HVGDLGNVVFVGNQEPVATVNFVDRLITLRGKNNIIGRTLVLHEQEDDLGLGGHELSLTT 119
HVGDLGN++ NQ AT F D+ + + +IIGR +V+H EDDLG GGHELS +T
Sbjct: 1 HVGDLGNII--ANQNGRATFRFEDKTVKVW---DIIGRAIVVHADEDDLGRGGHELSKST 55
Query: 118 GNAGPRVACGVI 83
GN+G RV CG+I
Sbjct: 56 GNSGARVGCGII 67
>SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/50 (46%), Positives = 33/50 (66%)
Frame = -2
Query: 325 HGGPDHNVRHVGDLGNVVFVGNQEPVATVNFVDRLITLRGKNNIIGRTLV 176
HG P+ RH+GDLGN+ N +A V+ D L++L G+ +IIGR+LV
Sbjct: 2 HGAPEDKDRHLGDLGNIEADAN--GIADVSITDCLVSLTGQCSIIGRSLV 49
>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
Length = 1531
Score = 31.1 bits (67), Expect = 0.80
Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 14/119 (11%)
Frame = -2
Query: 487 ITGTIVFTETSEGL--HITGTITGLPAGRYGFHVHAL------GDTSTCD--AAGPHFDP 338
I GT+ FT++S +I +TG+ + +H L +TC+ A G +DP
Sbjct: 66 IRGTVTFTQSSPNTSTNIKLALTGVNE-TLSWQIHDLPVIYKGNAATTCNTVALGNLYDP 124
Query: 337 EGN---NHGGPDHNVRHVGDL-GNVVFVGNQEPVATVNFVDRLITLRGKNNIIGRTLVL 173
+G VGDL G F+ +++V F D + L G++ I GRTLVL
Sbjct: 125 DGTATAQCSAAQKKSCAVGDLRGKFGFIDGNN-MSSV-FHDSNLPLTGRHGIFGRTLVL 181
>SB_41218| Best HMM Match : zf-C2H2 (HMM E-Value=0.68)
Length = 807
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 310 DLGLHDCCLQGRSVARRRHKCSCLREHEHGT 402
D + CCL GR R+ H C L+ H GT
Sbjct: 418 DCSHYHCCLCGRVCLRKVHLCCHLQAHALGT 448
>SB_16952| Best HMM Match : AAA_5 (HMM E-Value=0.47)
Length = 1345
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +3
Query: 459 VSVKTIVPVIFPDTKWATATLFSPLVPLVNTHRKTKTIIVTIAIFNKSTDDFLEPG 626
+S+ T V T T T+ + ++ T T TII+ + I +T +FL+PG
Sbjct: 495 ISINTTTTVT---TTIITTTIITTIIITTATIITTTTIIINVIIATTTTIEFLQPG 547
>SB_31762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1038
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 253 ALGFQQKQHFQDHQRDVHCDLGLHDCCL 336
ALGF QK + Q D H ++G+ +C L
Sbjct: 816 ALGFYQKSNNDQRQGDAHFNIGILNCKL 843
>SB_41447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 666
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 556 LCVFTSGTNGENRVAVAHLVS 494
LCV SG N N +++AHL S
Sbjct: 183 LCVMVSGENSANEMSLAHLAS 203
>SB_41915| Best HMM Match : F5_F8_type_C (HMM E-Value=9.1e-13)
Length = 317
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 561 TKTIIVTIAIFNKSTDDFLEPGISREF 641
TK V IFN S D+ E G+ REF
Sbjct: 245 TKKYRVCYGIFNGSLKDYRESGVRREF 271
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,723,472
Number of Sequences: 59808
Number of extensions: 437293
Number of successful extensions: 1156
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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