Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i01f
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X77020-1|CAA54318.1|  158|Caenorhabditis elegans copper/zinc sup...   142   2e-34
L20135-1|AAA28147.1|  158|Caenorhabditis elegans superoxide dism...   142   2e-34
AC006608-8|AAV34795.1|  158|Caenorhabditis elegans Sod (superoxi...   142   2e-34
AC006608-7|AAF39759.1|  180|Caenorhabditis elegans Sod (superoxi...   142   2e-34
AB190513-1|BAD51397.1|  221|Caenorhabditis elegans superoxide di...   142   2e-34
U42833-3|AAA83577.1|  178|Caenorhabditis elegans Sod (superoxide...   140   7e-34
Z27080-4|CAB61015.1|  176|Caenorhabditis elegans Hypothetical pr...   138   4e-33
AB003924-1|BAA28262.1|  176|Caenorhabditis elegans SOD4-1 protein.    138   4e-33
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr...    37   0.014
Z81110-2|CAB03259.1|  802|Caenorhabditis elegans Hypothetical pr...    37   0.014
Z75547-5|CAA99899.1|  207|Caenorhabditis elegans Hypothetical pr...    31   0.67 
AC006769-16|AAF60588.2|  338|Caenorhabditis elegans Serpentine r...    28   4.8  
Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical pr...    28   6.3  

>X77020-1|CAA54318.1|  158|Caenorhabditis elegans copper/zinc
           superoxide dismutase protein.
          Length = 158

 Score =  142 bits (343), Expect = 2e-34
 Identities = 77/155 (49%), Positives = 95/155 (61%), Gaps = 6/155 (3%)
 Frame = +2

Query: 128 AVAHLVSGKITGTIVFTETSEGLH--ITGTITGLPAGRYGFHVHALGD-TSTCDAAGPHF 298
           AVA L    +TGTI  T+ SE     I G I GL  G +GFHVH  GD T+ C +AGPHF
Sbjct: 5   AVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHF 64

Query: 299 DPEGNNHGGPDHNVRHVGDLGNVVFVGNQEPVATVNFVDRLITLRGKNNIIGRTLVLHEQ 478
           +P G  HGGP   +RHVGDLGNV      + VA +   D L+TL G N ++GR++V+H  
Sbjct: 65  NPFGKTHGGPKSEIRHVGDLGNV--EAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAG 122

Query: 479 EDDLGLG---GHELSLTTGNAGPRVACGVIGIRSP 574
           +DDLG G     E S  TGNAG R ACGVI + +P
Sbjct: 123 QDDLGEGVGDKAEESKKTGNAGARAACGVIALAAP 157


>L20135-1|AAA28147.1|  158|Caenorhabditis elegans superoxide
           dismutase protein.
          Length = 158

 Score =  142 bits (343), Expect = 2e-34
 Identities = 77/155 (49%), Positives = 95/155 (61%), Gaps = 6/155 (3%)
 Frame = +2

Query: 128 AVAHLVSGKITGTIVFTETSEGLH--ITGTITGLPAGRYGFHVHALGD-TSTCDAAGPHF 298
           AVA L    +TGTI  T+ SE     I G I GL  G +GFHVH  GD T+ C +AGPHF
Sbjct: 5   AVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHF 64

Query: 299 DPEGNNHGGPDHNVRHVGDLGNVVFVGNQEPVATVNFVDRLITLRGKNNIIGRTLVLHEQ 478
           +P G  HGGP   +RHVGDLGNV      + VA +   D L+TL G N ++GR++V+H  
Sbjct: 65  NPFGKTHGGPKSEIRHVGDLGNV--EAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAG 122

Query: 479 EDDLGLG---GHELSLTTGNAGPRVACGVIGIRSP 574
           +DDLG G     E S  TGNAG R ACGVI + +P
Sbjct: 123 QDDLGEGVGDKAEESKKTGNAGARAACGVIALAAP 157


>AC006608-8|AAV34795.1|  158|Caenorhabditis elegans Sod (superoxide
           dismutase) protein1, isoform b protein.
          Length = 158

 Score =  142 bits (343), Expect = 2e-34
 Identities = 77/155 (49%), Positives = 95/155 (61%), Gaps = 6/155 (3%)
 Frame = +2

Query: 128 AVAHLVSGKITGTIVFTETSEGLH--ITGTITGLPAGRYGFHVHALGD-TSTCDAAGPHF 298
           AVA L    +TGTI  T+ SE     I G I GL  G +GFHVH  GD T+ C +AGPHF
Sbjct: 5   AVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHF 64

Query: 299 DPEGNNHGGPDHNVRHVGDLGNVVFVGNQEPVATVNFVDRLITLRGKNNIIGRTLVLHEQ 478
           +P G  HGGP   +RHVGDLGNV      + VA +   D L+TL G N ++GR++V+H  
Sbjct: 65  NPFGKTHGGPKSEIRHVGDLGNV--EAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAG 122

Query: 479 EDDLGLG---GHELSLTTGNAGPRVACGVIGIRSP 574
           +DDLG G     E S  TGNAG R ACGVI + +P
Sbjct: 123 QDDLGEGVGDKAEESKKTGNAGARAACGVIALAAP 157


>AC006608-7|AAF39759.1|  180|Caenorhabditis elegans Sod (superoxide
           dismutase) protein1, isoform a protein.
          Length = 180

 Score =  142 bits (343), Expect = 2e-34
 Identities = 77/155 (49%), Positives = 95/155 (61%), Gaps = 6/155 (3%)
 Frame = +2

Query: 128 AVAHLVSGKITGTIVFTETSEGLH--ITGTITGLPAGRYGFHVHALGD-TSTCDAAGPHF 298
           AVA L    +TGTI  T+ SE     I G I GL  G +GFHVH  GD T+ C +AGPHF
Sbjct: 27  AVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHF 86

Query: 299 DPEGNNHGGPDHNVRHVGDLGNVVFVGNQEPVATVNFVDRLITLRGKNNIIGRTLVLHEQ 478
           +P G  HGGP   +RHVGDLGNV      + VA +   D L+TL G N ++GR++V+H  
Sbjct: 87  NPFGKTHGGPKSEIRHVGDLGNV--EAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAG 144

Query: 479 EDDLGLG---GHELSLTTGNAGPRVACGVIGIRSP 574
           +DDLG G     E S  TGNAG R ACGVI + +P
Sbjct: 145 QDDLGEGVGDKAEESKKTGNAGARAACGVIALAAP 179


>AB190513-1|BAD51397.1|  221|Caenorhabditis elegans superoxide
           dismutase protein.
          Length = 221

 Score =  142 bits (343), Expect = 2e-34
 Identities = 73/187 (39%), Positives = 113/187 (60%), Gaps = 5/187 (2%)
 Frame = +2

Query: 62  VTIIVFVFLCVFTSGTNGENRVAVAHLVSGKIT----GTIVFTETSEGLHITGTITGLPA 229
           V +I+ + +C+  +      R  +    +GKI     GTI F ++   L + G+++GL A
Sbjct: 5   VVLILALSVCIEAASEVIRARAYIFKAEAGKIPTELIGTIDFDQSGSFLKLNGSVSGLAA 64

Query: 230 GRYGFHVHALGDTST-CDAAGPHFDPEGNNHGGPDHNVRHVGDLGNVVFVGNQEPVATVN 406
           G++GFH+H  GDT   C +AG H++P   +HG PD + RH+GDLGN+    + + + +V+
Sbjct: 65  GKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNIESPASGDTLISVS 124

Query: 407 FVDRLITLRGKNNIIGRTLVLHEQEDDLGLGGHELSLTTGNAGPRVACGVIGIRSPVVWN 586
             D L +L G+ +IIGR++V+HE+ DDLG G  + S TTGNAG R+ACG IGI    +  
Sbjct: 125 --DSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTIGIVEERILE 182

Query: 587 SAVTSFP 607
           +   S P
Sbjct: 183 TTTASLP 189


>U42833-3|AAA83577.1|  178|Caenorhabditis elegans Sod (superoxide
           dismutase) protein5 protein.
          Length = 178

 Score =  140 bits (339), Expect = 7e-34
 Identities = 76/159 (47%), Positives = 98/159 (61%), Gaps = 6/159 (3%)
 Frame = +2

Query: 116 ENRVAVAHLVSGKITGTIVFTETSEG--LHITGTITGLPAGRYGFHVHALGD-TSTCDAA 286
           E++ AVA L    + GT+  T+ +EG      G I GL  G +GFH+H  GD T  C +A
Sbjct: 21  ESKRAVAVLRGTAVFGTVWLTQKAEGEETEFEGEIKGLSPGLHGFHIHQYGDSTDGCTSA 80

Query: 287 GPHFDPEGNNHGGPDHNVRHVGDLGNVVFVGNQEPVATVNFVDRLITLRGKNNIIGRTLV 466
           GPHF+P   NHGG D  VRHVGDLGNV      + VA + F D++++L G N +IGR++V
Sbjct: 81  GPHFNPCKMNHGGRDSVVRHVGDLGNV--EAGADGVAKIKFSDKVVSLFGANTVIGRSMV 138

Query: 467 LHEQEDDLGLG---GHELSLTTGNAGPRVACGVIGIRSP 574
           +H   DDLG G     E SL TGNAG R ACGVI + +P
Sbjct: 139 VHVDRDDLGQGIDDKAEESLKTGNAGARAACGVIALAAP 177


>Z27080-4|CAB61015.1|  176|Caenorhabditis elegans Hypothetical
           protein F55H2.1 protein.
          Length = 176

 Score =  138 bits (333), Expect = 4e-33
 Identities = 70/172 (40%), Positives = 108/172 (62%), Gaps = 5/172 (2%)
 Frame = +2

Query: 62  VTIIVFVFLCVFTSGTNGENRVAVAHLVSGKIT----GTIVFTETSEGLHITGTITGLPA 229
           V +I+ + +C+  +      R  +    +GKI     GTI F ++   L + G+++GL A
Sbjct: 5   VVLILALSVCIEAASEVIRARAYIFKAEAGKIPTELIGTIDFDQSGSFLKLNGSVSGLAA 64

Query: 230 GRYGFHVHALGDTST-CDAAGPHFDPEGNNHGGPDHNVRHVGDLGNVVFVGNQEPVATVN 406
           G++GFH+H  GDT   C +AG H++P   +HG PD + RH+GDLGN+    + + + +V+
Sbjct: 65  GKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNIESPASGDTLISVS 124

Query: 407 FVDRLITLRGKNNIIGRTLVLHEQEDDLGLGGHELSLTTGNAGPRVACGVIG 562
             D L +L G+ +IIGR++V+HE+ DDLG G  + S TTGNAG R+ACG IG
Sbjct: 125 --DSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTIG 174


>AB003924-1|BAA28262.1|  176|Caenorhabditis elegans SOD4-1 protein.
          Length = 176

 Score =  138 bits (333), Expect = 4e-33
 Identities = 70/172 (40%), Positives = 108/172 (62%), Gaps = 5/172 (2%)
 Frame = +2

Query: 62  VTIIVFVFLCVFTSGTNGENRVAVAHLVSGKIT----GTIVFTETSEGLHITGTITGLPA 229
           V +I+ + +C+  +      R  +    +GKI     GTI F ++   L + G+++GL A
Sbjct: 5   VVLILALSVCIEAASEVIRARAYIFKAEAGKIPTELIGTIDFDQSGSFLKLNGSVSGLAA 64

Query: 230 GRYGFHVHALGDTST-CDAAGPHFDPEGNNHGGPDHNVRHVGDLGNVVFVGNQEPVATVN 406
           G++GFH+H  GDT   C +AG H++P   +HG PD + RH+GDLGN+    + + + +V+
Sbjct: 65  GKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNIESPASGDTLISVS 124

Query: 407 FVDRLITLRGKNNIIGRTLVLHEQEDDLGLGGHELSLTTGNAGPRVACGVIG 562
             D L +L G+ +IIGR++V+HE+ DDLG G  + S TTGNAG R+ACG IG
Sbjct: 125 --DSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTIG 174


>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical protein
            T01D3.3b protein.
          Length = 1011

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
 Frame = +2

Query: 116  ENRVAVAHLVS--GKITGTIVFTE-TSEGLHITGTITGLPAGRYGFHVHALGDTST-CDA 283
            ++ +AVA L++  G   G   F++ TS  L I G +  LP GR+   +H  GD+S  C  
Sbjct: 880  DDTIAVAILITREGAHIGRFTFSQLTSTALRIHGEVYTLPVGRHAVVLHQFGDSSEGCSR 939

Query: 284  AGPHF 298
             G  F
Sbjct: 940  VGAPF 944


>Z81110-2|CAB03259.1|  802|Caenorhabditis elegans Hypothetical
           protein T01D3.3a protein.
          Length = 802

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
 Frame = +2

Query: 116 ENRVAVAHLVS--GKITGTIVFTE-TSEGLHITGTITGLPAGRYGFHVHALGDTST-CDA 283
           ++ +AVA L++  G   G   F++ TS  L I G +  LP GR+   +H  GD+S  C  
Sbjct: 671 DDTIAVAILITREGAHIGRFTFSQLTSTALRIHGEVYTLPVGRHAVVLHQFGDSSEGCSR 730

Query: 284 AGPHF 298
            G  F
Sbjct: 731 VGAPF 735


>Z75547-5|CAA99899.1|  207|Caenorhabditis elegans Hypothetical
           protein R11D1.4 protein.
          Length = 207

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +2

Query: 41  DLLKMAIVTIIVFVFLCVFTSGTNGENRVAVAHLVSGKITGTIVFTE 181
           DLLK++ +   +F+F+ +F   ++G NR +V  +   K  G I + +
Sbjct: 5   DLLKLSTMARSIFIFIVIFVQYSHGTNRDSVMEMAISKF-GLIFYDQ 50


>AC006769-16|AAF60588.2|  338|Caenorhabditis elegans Serpentine
           receptor, class j protein20 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 415 IHKVHCSYRLLVSNKNNISKITNVTYIVIWASMIVAFRVEVW 290
           I  VH  +R L    NNI K   + Y ++ + + V F + VW
Sbjct: 105 ILNVHFIFRYLALKSNNIIKFYFMPYGLLLSVIYVLFHMSVW 146


>Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical
           protein C11E4.6 protein.
          Length = 1170

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 8/33 (24%), Positives = 21/33 (63%)
 Frame = +2

Query: 110 NGENRVAVAHLVSGKITGTIVFTETSEGLHITG 208
           NG   +A+   ++G +TG++++++ +   H+ G
Sbjct: 611 NGRAPLAMPEEITGSVTGSVIYSQGNANQHLNG 643


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,666,893
Number of Sequences: 27780
Number of extensions: 309696
Number of successful extensions: 876
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)