Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11i01f
         (627 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) / ...   163   9e-41
At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloropla...   146   8e-36
At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/z...   141   4e-34
At1g48060.1 68414.m05358 F-box family protein contains Pfam PF00...    32   0.36 
At3g51070.1 68416.m05592 dehydration-responsive protein-related ...    29   1.9  
At2g28880.1 68415.m03510 para-aminobenzoate (PABA) synthase fami...    29   1.9  
At3g21480.1 68416.m02710 transcription activation domain-interac...    29   3.3  
At3g59210.1 68416.m06601 F-box family protein contains F-box dom...    28   4.4  
At1g76160.1 68414.m08844 multi-copper oxidase type I family prot...    28   4.4  
At1g18510.1 68414.m02310 hypothetical protein                          28   4.4  
At1g58360.1 68414.m06638 amino acid permease I (AAP1) identical ...    28   5.8  
At4g25530.1 68417.m03681 homeodomain protein (FWA) identical to ...    27   7.7  

>At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) /
           copper/zinc superoxide dismutase (CSD1) identical to
           SWISS-PROT: P24704
          Length = 152

 Score =  163 bits (396), Expect = 9e-41
 Identities = 80/150 (53%), Positives = 105/150 (70%), Gaps = 2/150 (1%)
 Frame = +2

Query: 125 VAVAHLVSGKITGTIVFTETSEGLH-ITGTITGLPAGRYGFHVHALGDTST-CDAAGPHF 298
           VAV +   G +TGTI FT+  +G+  ++GT++GL  G +GFHVHALGDT+  C + GPHF
Sbjct: 5   VAVLNSSEG-VTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHF 63

Query: 299 DPEGNNHGGPDHNVRHVGDLGNVVFVGNQEPVATVNFVDRLITLRGKNNIIGRTLVLHEQ 478
           +P+G  HG P+   RH GDLGN+  VG+ +  AT    D  I L G N+I+GR +V+H  
Sbjct: 64  NPDGKTHGAPEDANRHAGDLGNIT-VGD-DGTATFTITDCQIPLTGPNSIVGRAVVVHAD 121

Query: 479 EDDLGLGGHELSLTTGNAGPRVACGVIGIR 568
            DDLG GGHELSL TGNAG RVACG+IG++
Sbjct: 122 PDDLGKGGHELSLATGNAGGRVACGIIGLQ 151


>At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloroplast
           (SODCP) / copper/zinc superoxide dismutase (CSD2)
           identical to GP:3273753:AF061519
          Length = 216

 Score =  146 bits (355), Expect = 8e-36
 Identities = 69/139 (49%), Positives = 88/139 (63%), Gaps = 2/139 (1%)
 Frame = +2

Query: 155 ITGTIVFTETSEG-LHITGTITGLPAGRYGFHVHALGDTST-CDAAGPHFDPEGNNHGGP 328
           + G +  T+   G   +   ITGL  G +GFH+H  GDT+  C + GPHF+P    HG P
Sbjct: 77  VEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMTHGAP 136

Query: 329 DHNVRHVGDLGNVVFVGNQEPVATVNFVDRLITLRGKNNIIGRTLVLHEQEDDLGLGGHE 508
           +   RH GDLGN+    N + VA    VD  I L G N+++GR  V+HE +DDLG GGHE
Sbjct: 137 EDECRHAGDLGNIN--ANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELKDDLGKGGHE 194

Query: 509 LSLTTGNAGPRVACGVIGI 565
           LSLTTGNAG R+ACGVIG+
Sbjct: 195 LSLTTGNAGGRLACGVIGL 213


>At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/zinc
           superoxide dismutase (CSD3) identical to copper/zinc
           superoxide dismutase GI:3273755
          Length = 164

 Score =  141 bits (341), Expect = 4e-34
 Identities = 72/155 (46%), Positives = 100/155 (64%), Gaps = 4/155 (2%)
 Frame = +2

Query: 119 NRVAVAHLVSG--KITGTIVFTETSEGL-HITGTITGLPAGRYGFHVHALGDTST-CDAA 286
           N  AVA L++G   + G + F +   G  H+TG I+GL  G +GFH+H+ GDT+  C + 
Sbjct: 7   NLRAVA-LIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCIST 65

Query: 287 GPHFDPEGNNHGGPDHNVRHVGDLGNVVFVGNQEPVATVNFVDRLITLRGKNNIIGRTLV 466
           GPHF+P    HG P+   RH GDLGN++   N   VA +   D+ I L G+ +I+GR +V
Sbjct: 66  GPHFNPLNRVHGPPNEEERHAGDLGNILAGSNG--VAEILIKDKHIPLSGQYSILGRAVV 123

Query: 467 LHEQEDDLGLGGHELSLTTGNAGPRVACGVIGIRS 571
           +H   DDLG GGH+LS +TGNAG RV CG+IG++S
Sbjct: 124 VHADPDDLGKGGHKLSKSTGNAGSRVGCGIIGLQS 158


>At1g48060.1 68414.m05358 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 353

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 207 PVIWRPSEVSVKTIVPVIFPDTKWATATLFSPLVPLVNTHR 85
           P++W P+   ++   P+  PD  W + T+F    PL  TH+
Sbjct: 126 PIVWNPT---MRKFKPLRKPDKSWESLTVFLGYDPLERTHK 163


>At3g51070.1 68416.m05592 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 895

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +2

Query: 20  GSRKSSVDLLKMAIVTIIVFVFLCVFTSGTNGENRVAVAHLVSGKITGTIVFTETSE 190
           G++++S       I T+++FV LCVF       N V    +  G     +  TE S+
Sbjct: 8   GNKRTSTSSYASTI-TMVIFVALCVFGVWMLSSNSVIPPQITQGSTRAAVAETERSD 63


>At2g28880.1 68415.m03510 para-aminobenzoate (PABA) synthase family
           protein similar to PABA synthase from Streptomyces
           griseus [SP|P32483], Streptomyces pristinaespiralis
           [gi:1575336]; contains Pfam profiles  PF00425:
           chorismate binding enzyme, PF00117: glutamine
           amidotransferase class-I, PF04715: Anthranilate synthase
           component I, N terminal region
          Length = 919

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +2

Query: 443 NIIGRTLVLHEQEDDLGLGGHELSLTT 523
           NI+ RT+++HE E  +G GG  ++L++
Sbjct: 864 NIVIRTVIIHEDEASIGAGGAIVALSS 890


>At3g21480.1 68416.m02710 transcription activation
           domain-interacting protein-related contains weak
           similarity to Pax transcription activation domain
           interacting protein PTIP (GI:4336734) [Mus musculus]
          Length = 1045

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 5/30 (16%)
 Frame = +2

Query: 353 DLGNVVFVGNQEP-----VATVNFVDRLIT 427
           DLGN+ ++G+QEP      + +N VD+LI+
Sbjct: 279 DLGNLSYIGSQEPGEESQASALNLVDKLIS 308


>At3g59210.1 68416.m06601 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 484

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/27 (40%), Positives = 21/27 (77%)
 Frame = +2

Query: 368 VFVGNQEPVATVNFVDRLITLRGKNNI 448
           V + +Q+  + ++FVDR++ LRGK++I
Sbjct: 61  VAMQDQDQTSFIDFVDRVLKLRGKDHI 87


>At1g76160.1 68414.m08844 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 541

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +2

Query: 125 VAVAHLVSGKITGTIVFTETSEGLHITGTITGLPAGRYGFHVH-ALGDTSTCDAAGPHFD 301
           V  +   S  +T T +F  ++    ++G I G P  +  + ++ A    +   A+GP  +
Sbjct: 275 VVSSRFTSNVLTTTGIFRYSNSAGGVSGPIPGGPTIQIDWSLNQARAIRTNLSASGPRPN 334

Query: 302 PEGNNHGGPDHNVRHV 349
           P+G+ H G  +  R +
Sbjct: 335 PQGSYHYGMINTTRTI 350


>At1g18510.1 68414.m02310 hypothetical protein
          Length = 238

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 358 WKCCFCWKPRACSYSELCG*IDNSTWKKQH 447
           W+ C C +PR C  + + G     +WK QH
Sbjct: 139 WRYC-CAQPRGCGVTTMFGQPGEWSWKHQH 167


>At1g58360.1 68414.m06638 amino acid permease I (AAP1) identical to
           amino acid permease I GI:22641 from [Arabidopsis
           thaliana]
          Length = 485

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 240 PYLPAGNPVIVPVIWRPSEVSVKTIVPVIFP 148
           P+L   N  +  ++WR + V + T+V +IFP
Sbjct: 376 PFLGKFNISLFRLVWRTAYVVITTVVAMIFP 406


>At4g25530.1 68417.m03681 homeodomain protein (FWA) identical to
           Homeobox protein FWA (SP:Q9FVI6) [Arabidopsis thaliana];
           contains Pfam profiles PF01852: START domain and
           PF00046: Homeobox domain; identical to cDNA
           homeodomain-containing transcription factor FWA
           (FWA)GI:13506819
          Length = 686

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 171 TIVPVIFPDTKWATATLFSPLVPLVNTHRKTKT 73
           T+V  +    KW    +F+P+VP+ +TH+   T
Sbjct: 283 TLVKTLMDTGKWVN--VFAPIVPVASTHKVLST 313


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,833,424
Number of Sequences: 28952
Number of extensions: 286679
Number of successful extensions: 759
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)