Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11h24r
(367 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy... 56 2e-09
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 1.2
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 26 1.6
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 26 2.1
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S... 25 2.8
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ... 25 2.8
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 25 2.8
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 4.9
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 25 4.9
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 24 6.4
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 24 6.4
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 24 6.4
SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al... 24 8.5
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 24 8.5
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 24 8.5
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 24 8.5
>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 56.0 bits (129), Expect = 2e-09
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Frame = -1
Query: 301 LDEQFKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPSGLVE---SAKWKAWN 131
+ F+Q A V+ K P+ DE L LY+L+KQAT+GD N +P GL++ KW AW
Sbjct: 1 MSSTFEQAAADVKELKETPNSDELLKLYALFKQATVGDNNTEKP-GLLDLKGKFKWNAWE 59
Query: 130 GRKGISQD 107
KG S++
Sbjct: 60 ELKGKSKE 67
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 26.6 bits (56), Expect = 1.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 129 VAKASPKIDAKKQYIENAEKLHSKYA 52
+AKASP +DA KQ N + + ++A
Sbjct: 62 IAKASPIVDAAKQATVNVKSYYDEHA 87
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 1.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 177 AMLTSPMVACLYREYSARFSSSLGLVFQFLTLSA 278
AML+SP + ++YS F S ++ Q L ++A
Sbjct: 73 AMLSSPFTEAIGKKYSIAFFSGCYIIGQILLVTA 106
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 25.8 bits (54), Expect = 2.1
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -1
Query: 265 RNWKTKPSDDENLALYSLYKQATIGDVNIAQPSG 164
RNW+T DD +LA + K++ +++ ++ G
Sbjct: 531 RNWQTTVFDDSDLATMGVNKESLSNEMDYSKSLG 564
>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 2.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 126 RPFHAFHLALSTRPLGWAMLTSPMV 200
+ FHA L L +RP G+ + +P++
Sbjct: 302 KKFHAVRLTLRSRPAGFGLRCNPIL 326
>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 2.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 220 YSLYKQATIGDVNIAQPSGLVESAKW 143
Y L+ + + D+N A+ +VESAKW
Sbjct: 150 YKLF-DSYVYDINTAEQERVVESAKW 174
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 2.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 277 ADKVRNWKTKPSDDENLALYSLYK 206
A+ V NW + +D ENL++ S ++
Sbjct: 526 AENVNNWMLETNDHENLSMQSHFE 549
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 24.6 bits (51), Expect = 4.9
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 194 YGSLLVQGVQRKVLIVTGLGLPVPNLIGDLFELLVERHFVLSFEIRR 334
+ +L + + I+ + P+L+ F LLV+ VL FE +R
Sbjct: 2805 FKTLFISFTEEHRKIINMMVFTTPSLMSGSFSLLVKNPKVLEFENKR 2851
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 24.6 bits (51), Expect = 4.9
Identities = 8/35 (22%), Positives = 21/35 (60%)
Frame = -2
Query: 159 WRAPSGRHGTVAKASPKIDAKKQYIENAEKLHSKY 55
WR + + + + ++DA+ ++ E+AE+ +K+
Sbjct: 308 WRTSNTKQPSYEEIIDEVDAENRFDEDAEEFENKF 342
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 24.2 bits (50), Expect = 6.4
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -1
Query: 340 TLPPDLKR*HKMSLDEQFKQVADKVRNWKTKPSDDENL 227
T PP ++ K LD K++ D+ + +PS D L
Sbjct: 360 TQPPSMRNDWKDYLDNNSKEILDQFGFLQKRPSHDTPL 397
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 24.2 bits (50), Expect = 6.4
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 177 AMLTSPMVACLYREYSARFSSSLGLVFQFLTLSA 278
AML+SP + ++YS F S + ++ + L ++A
Sbjct: 73 AMLSSPFTERIGKKYSICFFSGVYIIAELLLVTA 106
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 24.2 bits (50), Expect = 6.4
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +2
Query: 188 ITYGSLLVQGVQRKVLIVTGLGLPVPNLIGDLFELLVERHFVLS 319
I +G + G+ ++ + LG+ PN +G L + LV + +S
Sbjct: 285 ILHGECVAIGMVKEAELARYLGILKPNAVGRLTKCLVSYNLPIS 328
>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 521
Score = 23.8 bits (49), Expect = 8.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 307 MSLDEQFKQVADKVRNWKTKPSDDENLALY 218
M LDEQ + + V N T DDE ++++
Sbjct: 100 MGLDEQVLRAREWVNNSLTWNQDDEEVSVF 129
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 23.8 bits (49), Expect = 8.5
Identities = 17/73 (23%), Positives = 29/73 (39%)
Frame = -1
Query: 337 LPPDLKR*HKMSLDEQFKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPSGLV 158
+PP + R +K+SLD + + + +DD L ++ Q I S
Sbjct: 407 IPPPMCR-YKLSLDYNVQMTSINATSDMLFAADDRRLTAFTFNSQEDIAKFGEFDISTYA 465
Query: 157 ESAKWKAWNGRKG 119
E +K+ G G
Sbjct: 466 EGLNFKSLLGLSG 478
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 23.8 bits (49), Expect = 8.5
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -2
Query: 318 DNTKCLSTSNSNRSPIRLGTGRPSPVTMRTLRCTPCTSRLP*VMLTLPSPA 166
D+ K LS ++S R G RP+ +L S L V L LPSP+
Sbjct: 519 DDLKYLSPNSSPRFVASDGPNRPASNGRSSLFSRGRASNLGDVGLRLPSPS 569
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 23.8 bits (49), Expect = 8.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 264 GTGRPSPVTMRTLRCTPCTSRL 199
G R +P + TL TP TSRL
Sbjct: 483 GKKRVAPQLLTTLSATPSTSRL 504
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,701,324
Number of Sequences: 5004
Number of extensions: 35751
Number of successful extensions: 124
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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