Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h24r
         (367 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)               43   7e-05
SB_32231| Best HMM Match : PRKCSH (HMM E-Value=4.3e-12)                33   0.094
SB_51502| Best HMM Match : TPR_2 (HMM E-Value=0)                       31   0.22 
SB_5760| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.38 
SB_37363| Best HMM Match : TPR_2 (HMM E-Value=0)                       30   0.50 
SB_29141| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.50 
SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15)                   29   0.87 
SB_56862| Best HMM Match : TPR_2 (HMM E-Value=1.4e-22)                 29   1.5  
SB_29231| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.0  
SB_28157| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.0  
SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.5  
SB_24238| Best HMM Match : RecR (HMM E-Value=3.7)                      27   3.5  
SB_58258| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.7  
SB_44452| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_24613| Best HMM Match : Ctr (HMM E-Value=0.73)                      27   6.2  
SB_7201| Best HMM Match : ketoacyl-synt (HMM E-Value=0)                27   6.2  
SB_9891| Best HMM Match : KE2 (HMM E-Value=1)                          26   8.1  

>SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 43.2 bits (97), Expect = 7e-05
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
 Frame = -1

Query: 301 LDEQFKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPS--GLVESAKWKAWNG 128
           + + F Q  D VR+ K    D++ L  Y L+KQAT G    ++P    +V  AKW++W+ 
Sbjct: 13  VQDLFAQATDYVRSLKNL-RDEQKLLFYGLFKQATEGPCKTSRPGFWDIVGKAKWESWHQ 71

Query: 127 RKGISQDRCQE 95
              + Q++  +
Sbjct: 72  HGKMPQEKAMK 82


>SB_32231| Best HMM Match : PRKCSH (HMM E-Value=4.3e-12)
          Length = 917

 Score = 32.7 bits (71), Expect = 0.094
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -2

Query: 234 RTLRCT-PCTSRLP*VMLTLPSPAVLWRAPSGRHGTVAKASPKIDAKKQYIENAEKLH 64
           R  RC+ P  SR        P P    +  S  HGT   +SP+++A   Y++  E+LH
Sbjct: 625 RLHRCSGPSKSRSKKAGEFSPKPTNRDKNRSATHGTAQASSPELEADGSYVKYTERLH 682


>SB_51502| Best HMM Match : TPR_2 (HMM E-Value=0)
          Length = 1161

 Score = 31.5 bits (68), Expect = 0.22
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +3

Query: 54  RIWSGVSPHFRCIASWHRSWEMPLRPFHAFHLALSTRPLGWAMLTSPMVACLYREYSARF 233
           R+WS +S  F  +  W  +   PL P    HL      + + +  S M+ C+Y E    F
Sbjct: 59  RVWSNLSDIFWFLIIWGMTMS-PLTPDQQIHLLKVCYDISYLLGDSTMMMCVYLEAGGTF 117


>SB_5760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 291

 Score = 30.7 bits (66), Expect = 0.38
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = +3

Query: 54  RIWSGVSPHFRCIASWHRSWEMPLRPFHAFHLALSTRPLGWAMLTSPMVACLYREYSARF 233
           R+WS +   F  +  W  +   PL P    HL      + + +  S M+ C+Y +    F
Sbjct: 99  RVWSNLPDIFWFLIMWGMTMS-PLTPDQQIHLLKVCNDISYLLGDSKMMMCVYLKAGGTF 157

Query: 234 S 236
           S
Sbjct: 158 S 158


>SB_37363| Best HMM Match : TPR_2 (HMM E-Value=0)
          Length = 936

 Score = 30.3 bits (65), Expect = 0.50
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +3

Query: 54  RIWSGVSPHFRCIASWHRSWEMPLRPFHAFHLALSTRPLGWAMLTSPMVACLYREYSARF 233
           R+WS +   F  +  W  +   PL P    HL      + + + +S M+ C+Y +    F
Sbjct: 49  RVWSNLPDIFGFLIMWGMTMS-PLTPDQQIHLLKVCYDISYLLGSSKMMMCVYLKAGDTF 107

Query: 234 S 236
           S
Sbjct: 108 S 108


>SB_29141| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1331

 Score = 30.3 bits (65), Expect = 0.50
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +3

Query: 54  RIWSGVSPHFRCIASWHRSWEMPLRPFHAFHLALSTRPLGWAMLTSPMVACLYREYSARF 233
           R+WS +   F  +  W  +   PL P    HL      + + + +S M+ C+Y +    F
Sbjct: 20  RVWSNLPDIFGFLIMWGMTMS-PLTPDQQIHLLKVCYDISYLLGSSKMMMCVYLKAGDTF 78

Query: 234 S 236
           S
Sbjct: 79  S 79


>SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15)
          Length = 1277

 Score = 29.5 bits (63), Expect = 0.87
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 179  CPAQRSCGERQVEGMERSQRHLPRS-MPRSNTSKMRRNSTPNTHKLLLR 36
            CP  RSCG+R    +  +   +P   + R +   MR NS P    +L +
Sbjct: 877  CPVCRSCGKRVERELNGNCSKIPNGHVRRESAEGMRSNSEPGAGDILCK 925


>SB_56862| Best HMM Match : TPR_2 (HMM E-Value=1.4e-22)
          Length = 300

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = +3

Query: 54  RIWSGVSPHFRCIASWHRSWEMPLRPFHAFHLALSTRPLGWAMLTSPMVACLYREYSARF 233
           R+WS +   F  +  W  +   PL P    HL      + + +  S M+ C+Y E    F
Sbjct: 20  RVWSKLFDIFCFLIMWGMTMS-PLTPDQQIHLLKVCYDISYLLGDSTMMMCVYLEAGGTF 78


>SB_29231| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2271

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = +3

Query: 54  RIWSGVSPHFRCIASWHRSWEMPLRPFHAFHLALSTRPLGWAMLTSPMVACLYREYSARF 233
           R+WS +   F  +  W  +   PL P    HL      + + +  S M+ C+Y      F
Sbjct: 291 RVWSNLPDIFWFLIMWGMTMS-PLTPDQQIHLLKVCYDISYLLGYSTMMMCVYLNAGDTF 349

Query: 234 S 236
           S
Sbjct: 350 S 350


>SB_28157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 63  SGVSPHFRCIASWHRSWEMPLRPFHAFHLALSTRPLGWAMLTS 191
           S +   F  +A+W ++W+M   P     L + T+ L    +TS
Sbjct: 535 SHLQQDFNKLAAWSKTWKMAFNPSKCCVLRIKTKDLPSTQITS 577


>SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1565

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +3

Query: 60  WSGVSPHFRCIASWHRSWEMPLRPFHAFHLALSTRPLGWAMLTSP 194
           WS   PH + I +W RS     +  H    A STR       T+P
Sbjct: 301 WSLRHPHCKLITTWSRSQPSTRQADHTLVTAPSTRQADHNTATAP 345


>SB_24238| Best HMM Match : RecR (HMM E-Value=3.7)
          Length = 153

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 318 DNTKCLSTSNSNRSPIRLGTG-RPSPVTMRTLRCTPCTSR 202
           DN  CL T+ S+ + +  GTG RP+  T+ T    P  +R
Sbjct: 78  DNGLCLPTTASSSAAVPAGTGARPAIFTLATPNRRPTETR 117


>SB_58258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 751

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 19/72 (26%), Positives = 35/72 (48%)
 Frame = -1

Query: 346 ATTLPPDLKR*HKMSLDEQFKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPS 167
           A+T  P        ++  +   VA   +  ++K SD+ +L    L  +A++GD ++A P 
Sbjct: 280 ASTQRPSTPDIMSPTIGRRLSIVAHGQQRRRSKISDELSLVASLLIHEASVGDDDVALPE 339

Query: 166 GLVESAKWKAWN 131
            +  S   K+WN
Sbjct: 340 -VSLSDVMKSWN 350


>SB_44452| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 131 RSQRHLPRSM-PRSNTSKMRRNSTPNTHK 48
           R QRH P S  PRS+ S+ RR+ TP   +
Sbjct: 112 RQQRHTPPSFTPRSSISR-RRSDTPKNRR 139


>SB_24613| Best HMM Match : Ctr (HMM E-Value=0.73)
          Length = 895

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 321 KDNTKCLSTSNSNRSPIRLGTGRPSPVTMRTLRCTPCTSR 202
           KD T  ++ S S R+ + L  GRP  +  +T   T C S+
Sbjct: 64  KDLTNSIA-SGSERNSLHLQPGRPFRINTKTWPSTHCASK 102


>SB_7201| Best HMM Match : ketoacyl-synt (HMM E-Value=0)
          Length = 1821

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 58  FGVEFLRIFDVLLLGIDLGRCLCDRSMP 141
           F V F+ +F  LLLG++L   LC   +P
Sbjct: 245 FLVPFILLFSFLLLGLELATLLCLFDVP 272


>SB_9891| Best HMM Match : KE2 (HMM E-Value=1)
          Length = 572

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 113 GDAFATVPCLPLGALHKTAGLG 178
           GD  A  P LP  ++H T GLG
Sbjct: 347 GDLAAPTPILPPQSVHNTGGLG 368


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,980,231
Number of Sequences: 59808
Number of extensions: 280037
Number of successful extensions: 1020
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 582596255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)