Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11h23r
(693 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12) 59 4e-09
SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 6e-07
SB_19701| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 9e-05
SB_27520| Best HMM Match : Notch (HMM E-Value=0.88) 33 0.22
SB_17988| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.38
SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09) 30 2.0
SB_21575| Best HMM Match : Trypsin (HMM E-Value=0) 29 4.7
SB_52432| Best HMM Match : NDUF_B7 (HMM E-Value=0.47) 28 6.2
SB_53672| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_37776| Best HMM Match : fn3 (HMM E-Value=1.4e-22) 28 8.3
>SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12)
Length = 120
Score = 58.8 bits (136), Expect = 4e-09
Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Frame = -3
Query: 682 ENIEVKHKLFKQLDG-VAPSHTIFASNTSSLSINEIASVVKRKDKFGGLHFFNPVPVMRL 506
EN+E+K K+F+ L+ ++ S I AS+TS + ++ ++ + + H NP + L
Sbjct: 5 ENLELKKKVFQNLEATLSSSEVILASSTSCIMPSKFTESLQLRQRCIVAHPINPPYYVPL 64
Query: 505 LEVVKGSETSEATYKTMMEWGKSVGKTCITCK-DTPGFVVNRLLVPYICEAIRLYE 341
+EV+ T + + ++ K +G++ + K +T GF+VNRL I EA RL E
Sbjct: 65 VEVIPAPWTDASVIEQTIKLMKDIGQSPVLLKKETNGFIVNRLQYALIAEAWRLVE 120
>SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 812
Score = 51.6 bits (118), Expect = 6e-07
Identities = 26/89 (29%), Positives = 49/89 (55%)
Frame = -3
Query: 691 AIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSINEIASVVKRKDKFGGLHFFNPVPVM 512
A +EN+EVK +FK + ++ + A+NT +L + +A V ++ G+ F PV +
Sbjct: 89 ATIENLEVKKSVFKSISQFCRTNAVIATNTLALDTSVVAEHVTNPERCLGIRFLYPVYSI 148
Query: 511 RLLEVVKGSETSEATYKTMMEWGKSVGKT 425
+E+ GS+TS T + + ++ + KT
Sbjct: 149 PEVEITLGSQTSPETIQKVQQFLEGKQKT 177
>SB_19701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 44.4 bits (100), Expect = 9e-05
Identities = 24/66 (36%), Positives = 37/66 (56%)
Frame = -3
Query: 691 AIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSINEIASVVKRKDKFGGLHFFNPVPVM 512
A+ E++ +KHK+ K+++ P H +FASNTSSL I + K+ D F PV +
Sbjct: 256 AVFEDLGIKHKVIKEVEQYIPEHCVFASNTSSLPITQEGVGPKQLDSL-SKQFGFPVGSV 314
Query: 511 RLLEVV 494
L + V
Sbjct: 315 TLADEV 320
Score = 42.3 bits (95), Expect = 4e-04
Identities = 23/58 (39%), Positives = 33/58 (56%)
Frame = -3
Query: 289 GYPMGPLELADYVGLDTNKFILDGWHKKFPDQQLFKPIPLLEKLVAEGKLGVKTGEGF 116
G+P+G + LAD VGLD + + K + I +L+ LVA G LG K+G+GF
Sbjct: 308 GFPVGSVTLADEVGLDVACHVAEDLEKALGARLGGADINVLKSLVAGGNLGRKSGKGF 365
>SB_27520| Best HMM Match : Notch (HMM E-Value=0.88)
Length = 198
Score = 33.1 bits (72), Expect = 0.22
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = -3
Query: 253 VGLDTNKFILDGWHKKFPDQQLFKPIPLLEKLVAEGKLGVKTGEGF 116
V N+F LDGW K Q + K +P EKLV +G G + G+ F
Sbjct: 82 VSTGKNEFGLDGWEKVGVTQNVEKQVPDWEKLVCKGIPG-EAGDTF 126
>SB_17988| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 32.3 bits (70), Expect = 0.38
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = -3
Query: 691 AIVENIEVKHKLFKQLDGVAP 629
AIVEN+ KHKLF LD AP
Sbjct: 32 AIVENLRTKHKLFTALDEAAP 52
>SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09)
Length = 765
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 269 RTGRLCWLRHKQVYLGWLAQEVSGSATLQT 180
R LCWL H + LG ++ SG A LQT
Sbjct: 75 RNSLLCWLSHLEKTLGIKERQNSGPARLQT 104
>SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 696
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 302 EARRWLPHGSTRTGRLCWLRHKQVY 228
E RW+ HG+T G+ C +H VY
Sbjct: 516 EEGRWVLHGATSFGKSCSPKHYSVY 540
>SB_52432| Best HMM Match : NDUF_B7 (HMM E-Value=0.47)
Length = 1250
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = -3
Query: 439 SVGKTCITCKDTPGFVVNRLLVPYICEAIRLYERGDASARDIDIAMKL 296
++ K C K PGF++++ L P I +R + + D A + +
Sbjct: 32 NIKKACSDPKSRPGFLMDKALEPSIKYIVRKFPQMDTKATQLQAVQSI 79
>SB_53672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 126 PVFTPNFP-SATSFSSKGIGLKSC*SGNFLCQP 221
PV TP P S SFSS+G G+K + L P
Sbjct: 352 PVLTPLTPVSLASFSSEGFGMKDSLKNSSLAPP 384
>SB_37776| Best HMM Match : fn3 (HMM E-Value=1.4e-22)
Length = 1296
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 375 TNSLFTTKPGVSLQVIQVLP--TDFPHSIIVLYVASDVSLPLTTSSKRITGTGLKK 536
+N + KPG + V+QV+P T+ P S++ + V ++ + S+ + ++
Sbjct: 111 SNYIGAGKPGTTNLVVQVVPTFTEVPSSVVSVRVGEEIRFKCSAVSETVPSVSWRR 166
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,974,144
Number of Sequences: 59808
Number of extensions: 447994
Number of successful extensions: 1158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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