Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h23r
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15290.1 68416.m01931 3-hydroxybutyryl-CoA dehydrogenase, put...   175   2e-44
At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP...   113   1e-25
At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fat...   107   5e-24
At1g65050.1 68414.m07374 meprin and TRAF homology domain-contain...    31   0.96 
At1g76990.3 68414.m08966 ACT domain containing protein low simil...    29   2.2  
At1g76990.2 68414.m08965 ACT domain containing protein low simil...    29   2.2  
At1g76990.1 68414.m08964 ACT domain containing protein low simil...    29   2.2  
At2g34090.1 68415.m04173 expressed protein  similar to GP|130183...    29   2.9  
At3g49280.1 68416.m05386 hypothetical protein                          28   6.8  

>At3g15290.1 68416.m01931 3-hydroxybutyryl-CoA dehydrogenase,
           putative similar to S(+)-beta-hydroxybutyryl CoA
           dehydrogenase (3-hydroxybutyryl-CoA dehydrogenase)
           [Paracoccus denitrificans] GI:12003356; contains Pfam
           profiles PF02737: 3-hydroxyacyl-CoA dehydrogenase NAD
           binding, PF00725: 3-hydroxyacyl-CoA dehydrogenase
           C-terminal
          Length = 294

 Score =  175 bits (426), Expect = 2e-44
 Identities = 88/191 (46%), Positives = 121/191 (63%)
 Frame = -3

Query: 691 AIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSINEIASVVKRKDKFGGLHFFNPVPVM 512
           AIVE+ ++K KLFK LDG+A S  I ASNTSS+SI  +AS  +R  +  G+HF NP P+M
Sbjct: 90  AIVESEDIKKKLFKDLDGIAKSSAILASNTSSISITRLASATRRPSQVIGMHFMNPPPIM 149

Query: 511 RLLEVVKGSETSEATYKTMMEWGKSVGKTCITCKDTPGFVVNRLLVPYICEAIRLYERGD 332
           +L+E+++G++TSE T+       +  GKT +  +D  GFVVNR+L+P I EA      G 
Sbjct: 150 KLVEIIRGADTSEETFLATKVLAERFGKTTVCSQDYAGFVVNRILMPMINEAFHTLYTGV 209

Query: 331 ASARDIDIAMKLGAGYPMGPLELADYVGLDTNKFILDGWHKKFPDQQLFKPIPLLEKLVA 152
           A+  DID  MK G  +PMGPLELAD +GLD    ++   H+   D + + P PLL + V 
Sbjct: 210 ATKEDIDSGMKHGTNHPMGPLELADLIGLDVCLSVMKVLHEGLGDSK-YAPCPLLVQYVD 268

Query: 151 EGKLGVKTGEG 119
            G+LG K G G
Sbjct: 269 AGRLGRKRGVG 279


>At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP2)
           identical to fatty acid multifunctional protein (AtMFP2)
           GB:AF123254 [gi:4337027] (Arabidopsis thaliana) (fatty
           acid beta-oxidation); contains Pfam profiles PF02737
           (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
           PF00378 (enoyl-CoA hydratase/isomerase family protein),
           PF00725 (3-hydroxyacyl-CoA dehydrogenase)
          Length = 725

 Score =  113 bits (272), Expect = 1e-25
 Identities = 68/194 (35%), Positives = 105/194 (54%), Gaps = 2/194 (1%)
 Frame = -3

Query: 691 AIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSINEIASVVKRKDKFGGLHFFNPVPVM 512
           A++ENI +K ++F  L+   P H I ASNTS++ +N+I    K +D+  G HFF+P  +M
Sbjct: 398 AVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIM 457

Query: 511 RLLEVVKGSETSEATYKTMMEWGKSVGKTCITCKDTPGFVVNRLLVPYICEAIRLYERGD 332
            LLE+V+ + TS      +++ GK + KT +   +  GF VNR+  PY   A+ L E G 
Sbjct: 458 PLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECG- 516

Query: 331 ASARDIDIAMKLGAGYPMGPLELADYVGLDTNKFILDGWHKKFPDQQLFKP--IPLLEKL 158
           A    ID A+    G PMGP  L D VG          + + F  ++ +K   IPL+++ 
Sbjct: 517 ADPYLIDRAIS-KFGMPMGPFRLCDLVGFGVAIATATQFIENF-SERTYKSMIIPLMQE- 573

Query: 157 VAEGKLGVKTGEGF 116
             + + G  T +GF
Sbjct: 574 --DKRAGEATRKGF 585



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
 Frame = -3

Query: 394 VVNRLLVPYICEAIRLYERGDA-SARDIDIAMKLGAGYPM---GPLELADYVGLDTNKFI 227
           ++     P + EA R++  G A  A D+DIA  +G G+P    G +  AD +G       
Sbjct: 627 IIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIMGMGFPPYRGGIMFWADSIGSKYIYSR 686

Query: 226 LDGWHKKFPDQQLFKPIPLLEKLVAEGKL 140
           LD W K +   + FKP   L +  ++G L
Sbjct: 687 LDEWSKAY--GEFFKPCAFLAERGSKGVL 713


>At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fatty
           acid multifunctional protein (AIM1) identical to
           gi:4337025; contains Pfam profiles PF02737
           (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
           PF00378 (enoyl-CoA hydratase/isomerase family protein),
           PF00725 (3-hydroxyacyl-CoA dehydrogenase)
          Length = 721

 Score =  107 bits (258), Expect = 5e-24
 Identities = 64/192 (33%), Positives = 100/192 (52%)
 Frame = -3

Query: 691 AIVENIEVKHKLFKQLDGVAPSHTIFASNTSSLSINEIASVVKRKDKFGGLHFFNPVPVM 512
           A++ENI++K  +FK+++ V   H I ASNTS++ ++ I      KD+  G HFF+P  +M
Sbjct: 395 AVIENIQLKQNIFKEIEKVCSPHCILASNTSTIDLDVIGEKTNSKDRIVGAHFFSPAHLM 454

Query: 511 RLLEVVKGSETSEATYKTMMEWGKSVGKTCITCKDTPGFVVNRLLVPYICEAIRLYERGD 332
            LLE+V+   TS      +M  GK++ K  +   +  GF VNR   PY   A  L   G 
Sbjct: 455 PLLEIVRSKNTSAQVILDLMAVGKAIKKVPVVVGNCIGFAVNRTFFPYSQAAHMLANLGV 514

Query: 331 ASARDIDIAMKLGAGYPMGPLELADYVGLDTNKFILDGWHKKFPDQQLFKPIPLLEKLVA 152
              R ID ++    G P+GP +L D  G      +   + K + D ++F+  P+ E L+ 
Sbjct: 515 DLFR-ID-SVITSFGLPLGPFQLGDLAGHGIGLAVGPIYAKVYGD-RMFRS-PMTELLLK 570

Query: 151 EGKLGVKTGEGF 116
            G+ G   G G+
Sbjct: 571 SGRNGKINGRGY 582


>At1g65050.1 68414.m07374 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein low similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 228

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -3

Query: 448 WGKSVGKTCITCKD-TPGFVVNRLL--VPYICEAIRLYERGDASARD 317
           WG S      T KD   GF+++RL    P + + ++LY +GD+ A D
Sbjct: 114 WGLSQVLPVETLKDRAKGFILSRLFHNPPLLVKTLKLYPKGDSEADD 160


>At1g76990.3 68414.m08966 ACT domain containing protein low
           similarity to uridylyltransferase SP|P56884 from
           Rhizobium meliloti; contains Pfam ACT domain PF01842
          Length = 453

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +3

Query: 396 KPGVSLQVIQVLPTDFPHSIIVLYVASD 479
           KPG+ L+V+QVL TD   +I   Y++SD
Sbjct: 45  KPGILLEVVQVL-TDLDLTITKAYISSD 71


>At1g76990.2 68414.m08965 ACT domain containing protein low
           similarity to uridylyltransferase SP|P56884 from
           Rhizobium meliloti; contains Pfam ACT domain PF01842
          Length = 453

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +3

Query: 396 KPGVSLQVIQVLPTDFPHSIIVLYVASD 479
           KPG+ L+V+QVL TD   +I   Y++SD
Sbjct: 45  KPGILLEVVQVL-TDLDLTITKAYISSD 71


>At1g76990.1 68414.m08964 ACT domain containing protein low
           similarity to uridylyltransferase SP|P56884 from
           Rhizobium meliloti; contains Pfam ACT domain PF01842
          Length = 453

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +3

Query: 396 KPGVSLQVIQVLPTDFPHSIIVLYVASD 479
           KPG+ L+V+QVL TD   +I   Y++SD
Sbjct: 45  KPGILLEVVQVL-TDLDLTITKAYISSD 71


>At2g34090.1 68415.m04173 expressed protein  similar to
           GP|1301832|gnl|PID|e239862|Z71287
          Length = 445

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 433 GKTCITCKDTPGFVVNRLLVPYICE-AIRLYERGDASARDIDIAMKLG 293
           G T I  K+ PG+ +N LLVP   E A+ L +  +    D+ +   +G
Sbjct: 376 GDTNIRLKNPPGYYINTLLVPKDGEIAVDLKQLSEQGIYDVRVVESVG 423


>At3g49280.1 68416.m05386 hypothetical protein
          Length = 176

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -3

Query: 478 SEATYKT-MMEWGKSVGKTCITC 413
           S+AT K  M++W K+VG +C+ C
Sbjct: 52  SDATPKERMLKWNKNVGTSCLLC 74


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,781,066
Number of Sequences: 28952
Number of extensions: 316674
Number of successful extensions: 773
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)