Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11h23f
(581 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19701| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 2e-12
SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 2e-10
SB_17988| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07
SB_41511| Best HMM Match : SAP (HMM E-Value=2.7e-08) 32 0.30
SB_28941| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.8026e-45) 32 0.39
SB_30623| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-27) 31 0.69
SB_58214| Best HMM Match : DAO (HMM E-Value=0.00017) 30 1.6
SB_7963| Best HMM Match : Pyr_redox_dim (HMM E-Value=2.2e-39) 29 2.1
SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12) 29 3.7
SB_51079| Best HMM Match : zf-C3HC4 (HMM E-Value=0.19) 29 3.7
SB_8863| Best HMM Match : DAO (HMM E-Value=0.04) 29 3.7
SB_12862| Best HMM Match : Ribosomal_S6 (HMM E-Value=3) 29 3.7
SB_63| Best HMM Match : RVT_1 (HMM E-Value=0) 28 4.8
SB_48559| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38) 28 6.4
SB_31176| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_25900| Best HMM Match : fn3 (HMM E-Value=2e-17) 27 8.5
>SB_19701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 69.7 bits (163), Expect = 2e-12
Identities = 44/129 (34%), Positives = 76/129 (58%)
Frame = +1
Query: 181 IKNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSRVAKKMYKDNP 360
+ +V V+G GLMG+G+ QVS Q +V + D + LA+ GT +++YK
Sbjct: 182 VNSVAVLGAGLMGAGVVQVSLQKFPHVIMKDNVIEGLAR-----GT------QQIYKGF- 229
Query: 361 QEGEKFVNDSLGRINTATDAAEASKSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFAS 540
E ++ ++ G+I+ + + AD+V+EA+ E++ +KHK+ K+++ P H +FAS
Sbjct: 230 -ERDRILSSLDGQIDY-----KGFEKADMVIEAVFEDLGIKHKVIKEVEQYIPEHCVFAS 283
Query: 541 NTSSLSINE 567
NTSSL I +
Sbjct: 284 NTSSLPITQ 292
>SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 812
Score = 62.9 bits (146), Expect = 2e-10
Identities = 43/135 (31%), Positives = 68/135 (50%)
Frame = +1
Query: 169 MQSAIKNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSRVAKKMY 348
MQ +V VIG GLMG+ IA A G V L D S A+ K+K+ + K+
Sbjct: 1 MQQEEPSVAVIGAGLMGTCIAGELAYHGARVNLYDRSAQAMEKSKEMLIQQ-----KEQL 55
Query: 349 KDNPQEGEKFVNDSLGRINTATDAAEASKSADLVVEAIVENIEVKHKLFKQLDGVAPSHT 528
K +E +D +G + EA ++ L+ EA +EN+EVK +FK + ++
Sbjct: 56 K---REEVMATSDFIGTVAFCESLEEAVVNSGLIFEATIENLEVKKSVFKSISQFCRTNA 112
Query: 529 IFASNTSSLSINEIA 573
+ A+NT +L + +A
Sbjct: 113 VIATNTLALDTSVVA 127
>SB_17988| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 52.0 bits (119), Expect = 3e-07
Identities = 24/51 (47%), Positives = 32/51 (62%)
Frame = +1
Query: 367 GEKFVNDSLGRINTATDAAEASKSADLVVEAIVENIEVKHKLFKQLDGVAP 519
G+ FV ++ R+ + D + ADLV+EAIVEN+ KHKLF LD AP
Sbjct: 2 GKTFVAGTMSRLKISLDVPGSVADADLVIEAIVENLRTKHKLFTALDEAAP 52
>SB_41511| Best HMM Match : SAP (HMM E-Value=2.7e-08)
Length = 993
Score = 32.3 bits (70), Expect = 0.30
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Frame = +1
Query: 280 NDALAKAKKSIGTNLSRVAKKMYKDNPQEGEKFVNDSLGRINTATDAAEASKSADLVVEA 459
N AL +AK N +VA + ++NP+E K +N+ LGR N+ K D + +
Sbjct: 708 NIALQQAKSDFYRN--KVASQ--ENNPKEAWKTINNLLGR-NSGQSVVNEQKINDQSISS 762
Query: 460 IVENIEVKHKLFKQL-----DGVAPSHTIFASNTSSLSIN 564
E E + F + + + P++T F S S +N
Sbjct: 763 PEEIAEAFNSYFSNIGPNLANSMPPTNTSFESFVESCQVN 802
>SB_28941| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.8026e-45)
Length = 2022
Score = 31.9 bits (69), Expect = 0.39
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
Frame = +1
Query: 100 NL*IDSKMMQFKVIVRNFSSSSAMQSAIKNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVS 279
+L +D ++MQF I N + + + N G ++ + + V
Sbjct: 1317 DLHLDERIMQFLSICNNMFTRADRKMISDNAIRTGRKMISDNAIHTGRNMINDNAICTVG 1376
Query: 280 N----DALAKAKKSIGTNLSRVAKKMYKDNP-QEGEKFVNDS 390
N +A+ +K I N R +KM DN + G K ++D+
Sbjct: 1377 NMISDNAIRTGRKMISDNAIRTGRKMISDNAIRTGRKMISDN 1418
>SB_30623| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-27)
Length = 440
Score = 31.1 bits (67), Expect = 0.69
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +1
Query: 85 LFYKPNL*IDSKMMQFKVIVRNFSSSSAMQSAIKNVTVIGGGLMGSGIA-QVSAQAGQNV 261
+F K + I K+ F+ V +F + K++ +IGGG +GS +A + + G V
Sbjct: 244 IFEKSSNNIKKKVTLFRK-VEDFQLLDKITKGAKSIVIIGGGFLGSELACALGHKEGVKV 302
Query: 262 TL-VDVSNDALAKAKKSIG 315
V V N +L K + ++G
Sbjct: 303 VPGVSVENVSLKKNQLALG 321
>SB_58214| Best HMM Match : DAO (HMM E-Value=0.00017)
Length = 280
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1
Query: 142 VRNFSSSSAMQSAIKNVTVIGGGLMGSGIA 231
+R FSSSS S +V ++GGG+MGS A
Sbjct: 89 MRCFSSSSRNVSKEFDVVIVGGGVMGSSSA 118
>SB_7963| Best HMM Match : Pyr_redox_dim (HMM E-Value=2.2e-39)
Length = 387
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 166 AMQSAIKNVTVIGGGLMGSGIAQVSAQAGQNVTLVD 273
++ + KN+ +IG G++G + V ++ G NVT V+
Sbjct: 106 SLSTVPKNLVLIGAGVIGVELGSVWSRLGANVTAVE 141
>SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12)
Length = 120
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +1
Query: 454 EAIVENIEVKHKLFKQLDG-VAPSHTIFASNTSSL 555
E EN+E+K K+F+ L+ ++ S I AS+TS +
Sbjct: 1 ECTPENLELKKKVFQNLEATLSSSEVILASSTSCI 35
>SB_51079| Best HMM Match : zf-C3HC4 (HMM E-Value=0.19)
Length = 337
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +3
Query: 165 CNAKCYQECNGYWRWSNGLRHSPGICPSRTECYP 266
C C+Q+C +W+W++ R CP +P
Sbjct: 51 CGQVCHQQC--FWKWAHYHRTEAVTCPHCRHVFP 82
>SB_8863| Best HMM Match : DAO (HMM E-Value=0.04)
Length = 485
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 148 NFSSSSAMQSAIKNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSND 285
N ++ S + + + V ++GGGL+G+ A A+ G V L + D
Sbjct: 152 NMANLSEDEKSRREVAIVGGGLVGALSAVFFAKRGYKVDLYESRQD 197
>SB_12862| Best HMM Match : Ribosomal_S6 (HMM E-Value=3)
Length = 224
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +1
Query: 280 NDALAKAKKSIGTNLSRVAKKMYKDNPQEGEKFVNDSLGR 399
N AL +AK + N ++A++ DNP+E K +ND LGR
Sbjct: 80 NIALREAKSNYYKN--KIAQE--HDNPKEAWKIINDLLGR 115
>SB_63| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 680
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +1
Query: 280 NDALAKAKKSIGTNLSRVAKKMYKDNPQEGEKFVNDSLGRINTATDAAE 426
N AL +AK + N ++A + K+NP+E K +N LGR T A E
Sbjct: 70 NIALRQAKSNYYRN--KIANQ--KNNPKEAWKTINSLLGRTKENTTANE 114
>SB_48559| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)
Length = 1541
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 265 LVDVSNDALAKAKKSIGTNLSRVAKKMYKDNPQEGEKFVNDSLGRINT 408
L++V ++ K+ K GT+ K Y + Q G KF+ S+ R+ T
Sbjct: 1375 LMNVFSEGDEKSSKLTGTDFVPFVIKHYGKSLQNGNKFIYQSMPRLLT 1422
>SB_31176| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 416 SVAVLILPSESFTNFSPSWG 357
++++L L E FTNF PSWG
Sbjct: 25 NLSLLGLSGEVFTNFLPSWG 44
>SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 27.9 bits (59), Expect = 6.4
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 3/132 (2%)
Frame = +1
Query: 190 VTVIGGGL-MGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSRVAKKMYKDNPQE 366
VT G + +GSG A V+ G V + + + A S+GT + Y + P
Sbjct: 277 VTTTGAPVSIGSG-ATVAIPQGVTVQAIRPPSMTVTVAS-SLGTPTYAIPISQYANAPIL 334
Query: 367 GEKFVNDSLGRINTATDA--AEASKSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFAS 540
+N+ + A+ AE + A LVV A NI+ +H+ F L S S
Sbjct: 335 VATGMNNLIPSTLVASTEHNAEKANEAGLVVVAAPNNIQSQHEGFNSLTEGDGSDEEARS 394
Query: 541 NTSSLSINEIAS 576
N + + N I +
Sbjct: 395 NAGTPNANAIVN 406
>SB_25900| Best HMM Match : fn3 (HMM E-Value=2e-17)
Length = 197
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 379 VNDSLGRINTATDAAEASKSADLVVEAIVENIEVKHKLFKQLDGV 513
VN + RIN T + + VE+I+ HKL ++ DG+
Sbjct: 113 VNSTSLRINCTTLPTSVANGYVIAFNVYVESIDGSHKLIEKKDGL 157
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,500,308
Number of Sequences: 59808
Number of extensions: 309883
Number of successful extensions: 821
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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