Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11h23f
(581 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g15290.1 68416.m01931 3-hydroxybutyryl-CoA dehydrogenase, put... 101 3e-22
At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fat... 82 3e-16
At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP... 79 2e-15
At5g63620.2 68418.m07988 oxidoreductase, zinc-binding dehydrogen... 33 0.11
At5g63620.1 68418.m07987 oxidoreductase, zinc-binding dehydrogen... 33 0.11
At5g11940.1 68418.m01396 subtilase family protein contains simil... 32 0.32
At3g14190.1 68416.m01793 expressed protein 31 0.42
At5g67290.1 68418.m08484 FAD-dependent oxidoreductase family pro... 30 0.98
At2g13440.1 68415.m01483 glucose-inhibited division family A pro... 30 0.98
At3g10370.1 68416.m01243 glycerol-3-phosphate dehydrogenase, put... 29 1.7
At3g10230.1 68416.m01224 lycopene beta cyclase (LYC) identical t... 29 1.7
At4g36980.1 68417.m05240 expressed protein 29 3.0
At1g54280.1 68414.m06188 haloacid dehalogenase-like hydrolase fa... 29 3.0
At1g34420.1 68414.m04275 leucine-rich repeat family protein / pr... 29 3.0
At3g63410.1 68416.m07139 chloroplast inner envelope membrane pro... 28 4.0
At5g52490.1 68418.m06512 fibrillarin, putative similar to fibril... 28 5.2
At4g30720.1 68417.m04354 expressed protein hypothetical protein ... 28 5.2
At4g28390.1 68417.m04063 ADP, ATP carrier protein, mitochondrial... 28 5.2
At5g22370.1 68418.m02610 ATP-binding family protein contains Pfa... 27 6.9
At5g22140.1 68418.m02578 pyridine nucleotide-disulphide oxidored... 27 6.9
At2g24580.1 68415.m02935 sarcosine oxidase family protein simila... 27 6.9
At3g44190.1 68416.m04738 pyridine nucleotide-disulphide oxidored... 27 9.1
At3g07020.2 68416.m00834 UDP-glucose:sterol glucosyltransferase ... 27 9.1
At3g07020.1 68416.m00833 UDP-glucose:sterol glucosyltransferase ... 27 9.1
At2g41680.1 68415.m05149 thioredoxin reductase, putative / NADPH... 27 9.1
At1g79820.2 68414.m09323 hexose transporter, putative similar to... 27 9.1
At1g79820.1 68414.m09322 hexose transporter, putative similar to... 27 9.1
At1g55650.1 68414.m06370 high mobility group (HMG1/2) family pro... 27 9.1
>At3g15290.1 68416.m01931 3-hydroxybutyryl-CoA dehydrogenase,
putative similar to S(+)-beta-hydroxybutyryl CoA
dehydrogenase (3-hydroxybutyryl-CoA dehydrogenase)
[Paracoccus denitrificans] GI:12003356; contains Pfam
profiles PF02737: 3-hydroxyacyl-CoA dehydrogenase NAD
binding, PF00725: 3-hydroxyacyl-CoA dehydrogenase
C-terminal
Length = 294
Score = 101 bits (243), Expect = 3e-22
Identities = 57/132 (43%), Positives = 87/132 (65%)
Frame = +1
Query: 181 IKNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSRVAKKMYKDNP 360
+K+V V+G G MGSGIAQ++A +G +V L+D DAL++A +I +++ R K
Sbjct: 4 MKSVGVVGAGQMGSGIAQLAATSGLDVWLMDADRDALSRATAAISSSVKRFVSKGLISK- 62
Query: 361 QEGEKFVNDSLGRINTATDAAEASKSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFAS 540
+ G+ D++ R+ ++ + SAD++VEAIVE+ ++K KLFK LDG+A S I AS
Sbjct: 63 EVGD----DAMHRLRLTSNLEDLC-SADIIVEAIVESEDIKKKLFKDLDGIAKSSAILAS 117
Query: 541 NTSSLSINEIAS 576
NTSS+SI +AS
Sbjct: 118 NTSSISITRLAS 129
>At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fatty
acid multifunctional protein (AIM1) identical to
gi:4337025; contains Pfam profiles PF02737
(3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
PF00378 (enoyl-CoA hydratase/isomerase family protein),
PF00725 (3-hydroxyacyl-CoA dehydrogenase)
Length = 721
Score = 81.8 bits (193), Expect = 3e-16
Identities = 47/143 (32%), Positives = 76/143 (53%)
Frame = +1
Query: 142 VRNFSSSSAMQSAIKNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTN 321
V N + IK V VIGGGLMGSGIA + V L +++++ L K KS+ N
Sbjct: 296 VPNVTDVGLKPRPIKKVAVIGGGLMGSGIATALLLSNIRVVLKEINSEFLMKGIKSVEAN 355
Query: 322 LSRVAKKMYKDNPQEGEKFVNDSLGRINTATDAAEASKSADLVVEAIVENIEVKHKLFKQ 501
+ + + + G+ +L D E + D+V+EA++ENI++K +FK+
Sbjct: 356 MKSLVSRGKLTQDKAGK-----ALSLFKGVLDYTEFN-DVDMVIEAVIENIQLKQNIFKE 409
Query: 502 LDGVAPSHTIFASNTSSLSINEI 570
++ V H I ASNTS++ ++ I
Sbjct: 410 IEKVCSPHCILASNTSTIDLDVI 432
>At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP2)
identical to fatty acid multifunctional protein (AtMFP2)
GB:AF123254 [gi:4337027] (Arabidopsis thaliana) (fatty
acid beta-oxidation); contains Pfam profiles PF02737
(3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
PF00378 (enoyl-CoA hydratase/isomerase family protein),
PF00725 (3-hydroxyacyl-CoA dehydrogenase)
Length = 725
Score = 79.0 bits (186), Expect = 2e-15
Identities = 49/131 (37%), Positives = 72/131 (54%), Gaps = 1/131 (0%)
Frame = +1
Query: 181 IKNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNL-SRVAKKMYKDN 357
IK V +IGGGLMGSGIA + V L +V+ L + NL SRV K
Sbjct: 312 IKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRK-----G 366
Query: 358 PQEGEKFVNDSLGRINTATDAAEASKSADLVVEAIVENIEVKHKLFKQLDGVAPSHTIFA 537
EKF ++ + + D E+ + D+V+EA++ENI +K ++F L+ P H I A
Sbjct: 367 SMSQEKF-EKTMSLLKGSLDY-ESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILA 424
Query: 538 SNTSSLSINEI 570
SNTS++ +N+I
Sbjct: 425 SNTSTIDLNKI 435
>At5g63620.2 68418.m07988 oxidoreductase, zinc-binding dehydrogenase
family protein contains PFAM zinc-binding dehydrogenase
domain PF00107
Length = 427
Score = 33.5 bits (73), Expect = 0.11
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 187 NVTVIGGGLMGSGIAQVSAQAG-QNVTLVDVSNDALAKAKKSIGTNLSRVAKK 342
++ VIG G +GS Q++ G ++ VDV +D L KAK T++ AK+
Sbjct: 248 SIAVIGIGGVGSSCLQIARAFGASDIIAVDVQDDKLQKAKTLGATHIVNAAKE 300
>At5g63620.1 68418.m07987 oxidoreductase, zinc-binding dehydrogenase
family protein contains PFAM zinc-binding dehydrogenase
domain PF00107
Length = 427
Score = 33.5 bits (73), Expect = 0.11
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 187 NVTVIGGGLMGSGIAQVSAQAG-QNVTLVDVSNDALAKAKKSIGTNLSRVAKK 342
++ VIG G +GS Q++ G ++ VDV +D L KAK T++ AK+
Sbjct: 248 SIAVIGIGGVGSSCLQIARAFGASDIIAVDVQDDKLQKAKTLGATHIVNAAKE 300
>At5g11940.1 68418.m01396 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 from [Oryza
sativa]
Length = 762
Score = 31.9 bits (69), Expect = 0.32
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +1
Query: 133 KVIVRNFSSSSAMQSAIKNVTVIG-GGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKS 309
+V V N S A + K + V+ GG G G V A +T+ + D +
Sbjct: 308 EVDVYNQISYGAFHAVAKGIPVLSAGGNFGPGAYTVQNIAPWIITVAATTLDRWYPTPLT 367
Query: 310 IGTNLSRVAKKMYKDNPQEGE 372
+G N++ +A+ YK N +G+
Sbjct: 368 LGNNVTLMARTPYKGNEIQGD 388
>At3g14190.1 68416.m01793 expressed protein
Length = 193
Score = 31.5 bits (68), Expect = 0.42
Identities = 25/101 (24%), Positives = 45/101 (44%)
Frame = +1
Query: 184 KNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSRVAKKMYKDNPQ 363
K+VT G+ + Q G L D++N + AK + + ++A K+
Sbjct: 23 KSVTAASVKSKGTVLGQ-KKPGGARKALNDITNKSGIHAKAAASSKNKQIASAAVKEIDI 81
Query: 364 EGEKFVNDSLGRINTATDAAEASKSADLVVEAIVENIEVKH 486
GE+F++D I + + SADL++ +I+ KH
Sbjct: 82 AGERFLHDHSKCIKEQQNLWDDHYSADLMLLHHGSSIKEKH 122
>At5g67290.1 68418.m08484 FAD-dependent oxidoreductase family
protein contains Pfam profile PF01266: FAD dependent
oxidoreductase
Length = 406
Score = 30.3 bits (65), Expect = 0.98
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = +1
Query: 139 IVRNFSSSSAMQSAI-----KNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAK 303
I N S S A + I K V V GGG++G A A+ G VTLV+ S A A +
Sbjct: 20 ICSNSSKSMAAKKQIGEETSKRVFVCGGGVIGVCTAYFLAKKGIAVTLVEKSAVACAASG 79
Query: 304 KSIG 315
K+ G
Sbjct: 80 KAGG 83
>At2g13440.1 68415.m01483 glucose-inhibited division family A
protein similar to GidA from Pseudomonas syringae
[GI:10764670]; contains Pfam profile PF01134 Glucose
inhibited division protein A
Length = 723
Score = 30.3 bits (65), Expect = 0.98
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +1
Query: 82 ILFYKPNL*IDSKMMQF---KVIVRNFSSSS--AMQSAIKNVTVIGGGLMGSGIAQVSAQ 246
I F+ P L + + Q + + +FSSSS A + +V V+G G G A SA+
Sbjct: 34 IPFHSPRLCVFLRPRQLFLNRPLAASFSSSSSGATSDSTYDVIVVGAGHAGCEAALASAR 93
Query: 247 AGQNVTLVDVSNDALA 294
G + L+ ++ D +A
Sbjct: 94 LGASTLLLTLNLDRIA 109
>At3g10370.1 68416.m01243 glycerol-3-phosphate dehydrogenase,
putative similar to glycerol-3-phosphate dehydrogenase
GB:BAA08926 from Mus musculus [SP|Q64521], Homo sapiens
[GI:1020315], Rattus norvegicus [SP|P35571]; contains
Pfam profile PF01266 FAD dependent oxidoreductase
Length = 629
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +1
Query: 187 NVTVIGGGLMGSGIAQVSAQAGQNVTLV---DVSNDALAKAKKSIGTNLSRVAKKMY 348
+V VIGGG GSG+A + G V LV D S+ +++ K I + + K ++
Sbjct: 75 DVLVIGGGATGSGVALDAVTRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVF 131
>At3g10230.1 68416.m01224 lycopene beta cyclase (LYC) identical to
lycopene beta cyclase GI:1399183|GB:AAB53337
[Arabidopsis thaliana]
Length = 501
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 172 QSAIKNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVS 279
+S + ++ ++GGG G +AQ ++AG +V +D S
Sbjct: 79 KSQVVDLAIVGGGPAGLAVAQQVSEAGLSVCSIDPS 114
>At4g36980.1 68417.m05240 expressed protein
Length = 560
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 277 SNDALAKAKKSIGTNLSRVAKKMYKDNPQEG-EKFVNDSLGRINTATDAAEASKSAD 444
++ ALAK K GT+ S+ ++ K+ PQE ++ +N L + A E +K +
Sbjct: 406 TSTALAKLSKVAGTSSSKQSQAEKKETPQERLKRIMNKQLTKQIKKDSATETAKKRE 462
>At1g54280.1 68414.m06188 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
sapiens [SP|O43520], Mus musculus [SP|P70704]; contains
InterPro accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 1240
Score = 28.7 bits (61), Expect = 3.0
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 334 AKKMYKDNPQEGEKFVNDSLGRINTATDAAEASK-SADLVVEAIVENIEVKHKLFKQLDG 510
AK+M D ++GE+ N S+ + T A ASK S+D +E +V + K + KQ G
Sbjct: 460 AKQMAMDLEEKGEEVANLSMNKGRTQRYAKLASKTSSDFELETVVTASDEKDQ--KQNTG 517
Query: 511 V 513
V
Sbjct: 518 V 518
>At1g34420.1 68414.m04275 leucine-rich repeat family protein /
protein kinase family protein contains leucine rich
repeat (LRR) domains, Pfam:PF00560; contains protein
kinase domain, Pfam:PF00069
Length = 966
Score = 28.7 bits (61), Expect = 3.0
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Frame = +1
Query: 253 QNVTLVDVSNDALAKAKKSIGTNLSRVAKKMYKDNPQEGEKFVNDSLGRINTATD-AAEA 429
Q +TL+D+S++ L + S NLS++ + +N G + +SL I T AA
Sbjct: 227 QELTLIDLSDNQLNGSIPSSLGNLSKLESLLLSNNYLSG--LIPESLSSIQTLRRFAANR 284
Query: 430 SKSADLVVEAIVENIEVKHKLFKQLDGVAP 519
++ + + +++E F L G P
Sbjct: 285 NRFTGEIPSGLTKHLENLDLSFNSLAGSIP 314
>At3g63410.1 68416.m07139 chloroplast inner envelope membrane
protein, putative (APG1) similar to SP|P23525 37 kDa
inner envelope membrane protein, chloroplast precursor
(E37) {Spinacia oleracea}; contains Pfam profile
PF01209: methlytransferase, UbiE/COQ5 family
Length = 338
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 190 VTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKK 306
V +GGG + + V +NVT++D S LAKAK+
Sbjct: 114 VVDVGGGTGFTTLGIVKTVKAKNVTILDQSPHQLAKAKQ 152
>At5g52490.1 68418.m06512 fibrillarin, putative similar to
fibrillarin from {Xenopus laevis} SP|P22232, {Mus
musculus} SP|P35550, {Homo sapiens} SP|P22087
Length = 292
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = -3
Query: 306 LLGFSQSIIADVN---QGNILSCLGRYLGYAGAH*TTSNNRYILDSTLHCRGT*KISYDN 136
L+G I +DVN Q NILS Y +G H S +DST+ ++ +
Sbjct: 200 LVGMVDIIFSDVNHPEQANILSLNASYFLKSGGHFMISIKANSIDSTIAAETVYQMEVEK 259
Query: 135 FKLHHFR 115
++ R
Sbjct: 260 LQMEELR 266
>At4g30720.1 68417.m04354 expressed protein hypothetical protein -
Synechocystis sp. (strain PCC 6803),PIR2:S76076
Length = 749
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 190 VTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSR 330
+ V+GGG G A V A+ G +VTL++ A+ + + IG + R
Sbjct: 269 IAVVGGGPSGLFAALVLAEFGADVTLIE-RGQAVEERGRDIGALVVR 314
>At4g28390.1 68417.m04063 ADP, ATP carrier protein, mitochondrial,
putative / ADP/ATP translocase, putative / adenine
nucleotide translocator, putative similar to
mitochondrial ADP,ATP carrier protein SP:P12857 from
[Zea mays]
Length = 379
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +3
Query: 102 LINRFENDAV*SYRKKFFKFLCNAKCYQECNGYWRWSNGLRHSPG 236
+I F A+ K +FK L N K +E +GYW+W G S G
Sbjct: 150 VIRYFPTQALNFAFKDYFKRLFNFK--KEKDGYWKWFAGNLASGG 192
>At5g22370.1 68418.m02610 ATP-binding family protein contains Pfam
domain, PF03029: Conserved hypothetical ATP binding
protein
Length = 291
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -3
Query: 372 LSFLGIIFVHLLCDPAEVCANALLGFSQSIIADVNQGNILS 250
L+ + +I HL CDP ++ LL S + ++ N+LS
Sbjct: 133 LTAVQLIDSHLCCDPGNYVSSLLLSLSTMLHMELPHVNVLS 173
>At5g22140.1 68418.m02578 pyridine nucleotide-disulphide
oxidoreductase family protein contains Pfam profile
PF00070 Pyridine nucleotide-disulphide oxidoreductase
domain
Length = 365
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 184 KNVTVIGGGLMGSGIAQVSAQAGQNVTLVD 273
K V VIGGG+ GS +A Q VTL+D
Sbjct: 12 KRVVVIGGGIAGS-LAAKLLQFDAEVTLID 40
>At2g24580.1 68415.m02935 sarcosine oxidase family protein similar
to peroxisomal sarcosine oxidase from Homo sapiens
[SP|Q9P0Z9], Oryctolagus cuniculus [SP|P79371], Mus
musculus [SP|Q9D826]
Length = 416
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 187 NVTVIGGGLMGSGIAQVSAQAGQNVTLVD 273
+V V+G G+MGS A A+ GQ L++
Sbjct: 10 DVIVVGAGVMGSSAAYQLAKRGQKTLLLE 38
>At3g44190.1 68416.m04738 pyridine nucleotide-disulphide
oxidoreductase family protein low similarity to
dihydrolipoamide dehydrogenase from Clostridium magnum
[GI:472330]; contains Pfam profile PF00070 Pyridine
nucleotide-disulphide oxidoreductase domain
Length = 367
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 184 KNVTVIGGGLMGSGIAQVSAQAGQNVTLVD 273
K V VIGGG+ GS +A Q ++TL+D
Sbjct: 12 KRVIVIGGGIAGS-LASKFLQFDSDLTLID 40
>At3g07020.2 68416.m00834 UDP-glucose:sterol glucosyltransferase
(UGT80A2) identical to UDP-glucose:sterol
glucosyltransferase [Arabidopsis thaliana] GI:2462931;
contains Pfam profile: PF03033 glycosyltransferase
family 28 N-terminal domain
Length = 637
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +1
Query: 154 SSSSAMQSAIKNVTVIGGGLMGSGIAQVSAQAGQN--VTLVDVSNDALAKAKKSIGTNLS 327
SSSS+ ++++K + I GG SG+ VS + N + ++++ +A++ + + S
Sbjct: 20 SSSSSGRASVK-IEEIEGGAAASGVVIVSEELETNPKTVVASIADETVAESSGTGNKSFS 78
Query: 328 RV 333
RV
Sbjct: 79 RV 80
>At3g07020.1 68416.m00833 UDP-glucose:sterol glucosyltransferase
(UGT80A2) identical to UDP-glucose:sterol
glucosyltransferase [Arabidopsis thaliana] GI:2462931;
contains Pfam profile: PF03033 glycosyltransferase
family 28 N-terminal domain
Length = 637
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +1
Query: 154 SSSSAMQSAIKNVTVIGGGLMGSGIAQVSAQAGQN--VTLVDVSNDALAKAKKSIGTNLS 327
SSSS+ ++++K + I GG SG+ VS + N + ++++ +A++ + + S
Sbjct: 20 SSSSSGRASVK-IEEIEGGAAASGVVIVSEELETNPKTVVASIADETVAESSGTGNKSFS 78
Query: 328 RV 333
RV
Sbjct: 79 RV 80
>At2g41680.1 68415.m05149 thioredoxin reductase, putative /
NADPH-dependent thioredoxin reductase, putative The last
2 exons encode thioredoxin. There is an EST match to
exons 5-7, and the distance between exon 7 and exon 8 is
only 90bp. It is unlikely this is two separate genes,
but more likely a hybrid protein.
Length = 529
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 112 DSKMMQFKVIVRNFSSSSAMQSAIKNVTVIGGGLMGSGIAQVSAQA 249
DS ++ + SSSS+ I+NV +IG G G A +A+A
Sbjct: 60 DSLRLRVSATANSPSSSSSGGEIIENVVIIGSGPAGYTAAIYAARA 105
>At1g79820.2 68414.m09323 hexose transporter, putative similar to
hexose transporter GI:8347246 from (Solanum tuberosum);
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 495
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 366 FLGIIFVHLLCDPAEVCANALLGFSQSIIADVNQGNILSCLGRYL 232
F+G++F+ +L V NA+ GF + Q N++ G+ L
Sbjct: 439 FVGLLFLRMLEQLGSVLLNAIFGFFCVVAVIFVQKNVVETKGKSL 483
>At1g79820.1 68414.m09322 hexose transporter, putative similar to
hexose transporter GI:8347246 from (Solanum tuberosum);
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 495
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 366 FLGIIFVHLLCDPAEVCANALLGFSQSIIADVNQGNILSCLGRYL 232
F+G++F+ +L V NA+ GF + Q N++ G+ L
Sbjct: 439 FVGLLFLRMLEQLGSVLLNAIFGFFCVVAVIFVQKNVVETKGKSL 483
>At1g55650.1 68414.m06370 high mobility group (HMG1/2) family
protein / ARID/BRIGHT DNA-binding domain-containing
protein low similarity to Dead Ringer Protein Chain A
Dna-Binding Domain (GI:6573608), Arid-Dna Complex
(GI:20150982) from [Drosophila melanogaster]; contains
Pfam profiles PF00505: HMG (high mobility group) box,
PF01388: ARID/BRIGHT DNA binding domain
Length = 337
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = +1
Query: 289 LAKAKKSIGTNLSRVAKKMYKDNPQEGEKFVNDSLGRINTATDAAEASKSADLVVEAIVE 468
L+++ + + SR K YK + + + I ATDA ++ +A+ EA E
Sbjct: 255 LSESDRKVYYEKSREDGKRYKMEILQYRSLMESRVAEIVAATDAGTSASAAETADEASQE 314
Query: 469 NI 474
N+
Sbjct: 315 NL 316
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,045,292
Number of Sequences: 28952
Number of extensions: 215347
Number of successful extensions: 617
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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