Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h22r
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73896-8|CAA98061.1|  525|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z73422-12|CAJ76980.1|  525|Caenorhabditis elegans Hypothetical p...    30   1.8  
Z73422-10|CAA97772.1|  525|Caenorhabditis elegans Hypothetical p...    30   1.8  
AF047653-5|AAT92057.1|  117|Caenorhabditis elegans Hypothetical ...    28   5.4  

>Z73896-8|CAA98061.1|  525|Caenorhabditis elegans Hypothetical
           protein B0564.9 protein.
          Length = 525

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/63 (33%), Positives = 35/63 (55%)
 Frame = -3

Query: 514 MAAFEKALVVRFINKFEAFNYTSSALK*AQ*RRRLIFRAFEYIYSV*NYNRKSNTKNKKI 335
           MA F++ L +RF + F +F+   S  K  + R + +F  F   +S+ N  +K+N +NK I
Sbjct: 1   MALFQR-LSLRF-SGFGSFSLMLSRYKFLKSRFKFVFALFFPGFSLFNIEKKTNCRNKMI 58

Query: 334 KTM 326
             M
Sbjct: 59  HRM 61


>Z73422-12|CAJ76980.1|  525|Caenorhabditis elegans Hypothetical
           protein B0564.9 protein.
          Length = 525

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/63 (33%), Positives = 35/63 (55%)
 Frame = -3

Query: 514 MAAFEKALVVRFINKFEAFNYTSSALK*AQ*RRRLIFRAFEYIYSV*NYNRKSNTKNKKI 335
           MA F++ L +RF + F +F+   S  K  + R + +F  F   +S+ N  +K+N +NK I
Sbjct: 1   MALFQR-LSLRF-SGFGSFSLMLSRYKFLKSRFKFVFALFFPGFSLFNIEKKTNCRNKMI 58

Query: 334 KTM 326
             M
Sbjct: 59  HRM 61


>Z73422-10|CAA97772.1|  525|Caenorhabditis elegans Hypothetical
           protein B0564.6a protein.
          Length = 525

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/63 (33%), Positives = 35/63 (55%)
 Frame = -3

Query: 514 MAAFEKALVVRFINKFEAFNYTSSALK*AQ*RRRLIFRAFEYIYSV*NYNRKSNTKNKKI 335
           MA F++ L +RF + F +F+   S  K  + R + +F  F   +S+ N  +K+N +NK I
Sbjct: 1   MALFQR-LSLRF-SGFGSFSLMLSRYKFLKSRFKFVFALFFPGFSLFNIEKKTNCRNKMI 58

Query: 334 KTM 326
             M
Sbjct: 59  HRM 61


>AF047653-5|AAT92057.1|  117|Caenorhabditis elegans Hypothetical
           protein W02F12.4c protein.
          Length = 117

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 168 HGKTYNKAVEGHINKLTKSCYEQSWFY 248
           H + +NKA E H N L   C E S+F+
Sbjct: 92  HARAFNKAEE-HYNVLNNLCIESSFFF 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,819,156
Number of Sequences: 27780
Number of extensions: 265434
Number of successful extensions: 594
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)