Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h22r
         (681 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g29190.1 68416.m03661 terpene synthase/cyclase family protein...    29   2.2  
At4g20230.1 68417.m02956 terpene synthase/cyclase family protein...    28   5.0  
At1g52410.2 68414.m05915 caldesmon-related weak similarity to Ca...    28   6.6  
At1g52410.1 68414.m05914 caldesmon-related weak similarity to Ca...    28   6.6  

>At3g29190.1 68416.m03661 terpene synthase/cyclase family protein
           contains Pfam profile: PF01397 terpene synthase family
          Length = 519

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 231 RNKILLIYLYVPLRLCCKFSHEKNPTLK 148
           + +IL+IY+ + L L C+F  E   TLK
Sbjct: 29  KKRILMIYMLISLGLACQFEEEIYETLK 56


>At4g20230.1 68417.m02956 terpene synthase/cyclase family protein
           vetispiradiene synthase, Hyoscyamus muticus,
           PATX:G763421
          Length = 609

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 231 RNKILLIYLYVPLRLCCKFSHEKNPTLK 148
           + KIL+IYL+V L L   F  E   TLK
Sbjct: 116 KTKILMIYLFVSLGLAYHFEEEIYETLK 143


>At1g52410.2 68414.m05915 caldesmon-related weak similarity to
           Caldesmon (CDM) (Swiss-Prot:P12957) [Gallus gallus]
          Length = 759

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 377 NTIYILKSSEYQTSSLLCLF*GRTCIIKSFKLIYKAYHKSLFERG 511
           NTI +  S E +  S+     GR+ ++   KL ++A+H S+ + G
Sbjct: 79  NTISLSLSDESEVGSVSDESVGRSSLLDQIKLEFEAHHNSINQAG 123


>At1g52410.1 68414.m05914 caldesmon-related weak similarity to
           Caldesmon (CDM) (Swiss-Prot:P12957) [Gallus gallus]
          Length = 755

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 377 NTIYILKSSEYQTSSLLCLF*GRTCIIKSFKLIYKAYHKSLFERG 511
           NTI +  S E +  S+     GR+ ++   KL ++A+H S+ + G
Sbjct: 79  NTISLSLSDESEVGSVSDESVGRSSLLDQIKLEFEAHHNSINQAG 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,681,400
Number of Sequences: 28952
Number of extensions: 234555
Number of successful extensions: 500
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)