Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h22f
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    23   1.5  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          23   1.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   7.9  

>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 160 THWPRLELATGTVNGKTPSLYYTSGR 83
           +H P +E   G  NGK     YTS +
Sbjct: 71  SHEPEMERPKGASNGKRARTAYTSSQ 96


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 160 THWPRLELATGTVNGKTPSLYYTSGR 83
           +H P +E   G  NGK     YTS +
Sbjct: 91  SHEPEMERPKGASNGKRARTAYTSSQ 116


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 102  KDGVLPFTVPVASSKRG 152
            KDGV+P  V + S+++G
Sbjct: 1080 KDGVIPDPVALKSAQQG 1096


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,643
Number of Sequences: 336
Number of extensions: 2893
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)