Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h22f
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    30   0.22 
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa...    29   0.39 
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    26   3.6  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    25   8.4  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   8.4  
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    25   8.4  

>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
 Frame = +1

Query: 256 SEILNNELKDDPYVIVFLEETLSVEDFSRKNNEGDISIPYLYDNLSDALYLPSVEDAS-- 429
           SEIL  E+KD    IV  +E + V +   K N   ++ P  YD +      P VE+A   
Sbjct: 2   SEILIEEIKDQ---IVVKDEEIDVSELEVKLN---VTKPVGYDTVVVIEGAPVVEEAKQQ 55

Query: 430 ---RVLEEVAKGAVHVKLTQNGLSAAIEDKNNRFMFIAL 537
              R L       +  K+ +NG     E+KN + M + L
Sbjct: 56  DFFRFLSSKVLAKIG-KVKENGFYMPFEEKNGKKMSLGL 93


>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 440

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = +1

Query: 286 DPYVIVFLEETLSVEDFSRKNNEGDISIPYLYDNLSDALYLPSVEDASRVLEEVAKGAVH 465
           + Y IVF+E+  S ED+   +    +S     + ++D L + +V+  S+ +E     A+ 
Sbjct: 288 EKYPIVFIEDPFSEEDWGAFSY---MSSKTKVEVIADDLTVTNVKRLSKAIELKCANALL 344

Query: 466 VKLTQNG-LSAAIEDKN 513
           VK+ Q G LS  I+  N
Sbjct: 345 VKINQIGSLSETIDAAN 361


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/62 (22%), Positives = 27/62 (43%)
 Frame = +1

Query: 346 NNEGDISIPYLYDNLSDALYLPSVEDASRVLEEVAKGAVHVKLTQNGLSAAIEDKNNRFM 525
           N+  D S  +   N    + LPS  DAS ++    +   H+ L  +G+   + ++     
Sbjct: 310 NDSSDPSDNFTPSNTESTIDLPSATDASHLMSRPDREVNHLILCCHGIGQKMGERVETVS 369

Query: 526 FI 531
           F+
Sbjct: 370 FV 371


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 316 TLSVEDFSRKNNEGDISIPYLYDNLSDALYLPSVEDASRVLE 441
           +L+   F+  +NE       L  NL D  Y P++E  S  LE
Sbjct: 615 SLAASKFNDDDNERLFPSQLLPGNLHDQFYSPTIEKISDELE 656


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 250 GFSEILNNELKDDPYVIVFLEETL 321
           GF E+L  EL+ D +V++ L  TL
Sbjct: 604 GFWEVLTEELQKDVHVLLSLVSTL 627


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 382 HTGTESKYHLRYFYVKNLRPIRF 314
           + G +S  H R+  VKN+ PI+F
Sbjct: 289 YNGLDSSKHPRWDRVKNIDPIKF 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,454,230
Number of Sequences: 5004
Number of extensions: 49491
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)