Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h22f
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_43683| Best HMM Match : RVT_1 (HMM E-Value=0.024)                   29   2.9  
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)              29   3.8  
SB_47814| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_27611| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)                   27   8.7  
SB_13699| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1105

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
 Frame = +1

Query: 115  CRLLFPLLVLSVASASTVPVFLWGDXXXXXXXXXXXXXXXTVSAQGF-SEILNNELKDDP 291
            C     +   +V +   VPVF+W                 T+S + F ++ L   L    
Sbjct: 868  CSAFVVICHFTVEAVFPVPVFIWSKESSLTQDSSPLAGH-TLSTEDFQNKYLQKVLHKPQ 926

Query: 292  YVIVFLEETLSVEDFSR------KNNEGDI-SIPYLYDNLSDALYLPSVE 420
             V +F+++ LSV+DF+R        + G   ++    D  + ++ LPSV+
Sbjct: 927  TVALFVQDRLSVDDFTRYGDAFTSGSHGAFNNLKITMDKANSSIVLPSVD 976


>SB_43683| Best HMM Match : RVT_1 (HMM E-Value=0.024)
          Length = 474

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
 Frame = +1

Query: 253 FSEILNNELKDDPYVIVFLEETLSVEDFS-RKNNEGDISIPYLYDNLSDAL-----YLPS 414
           FS+I    +    Y  +   + LS + +  RKN+   +++ +LYD LS+A+      L  
Sbjct: 101 FSKIFEKVVYKRLYNFLIKYDILSKKQYGFRKNHSTALALLHLYDTLSNAIDYKKYTLGG 160

Query: 415 VEDASRVLEEVAKGAVHVKLTQNGL 489
             D S+  + V  G +  KL   G+
Sbjct: 161 FIDLSKAFDTVNHGILLAKLHNYGI 185


>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
          Length = 1023

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 244 RTPCSMGSISGSFQSYWISRPIRTLAPSTHWPRLELATGT 125
           R PC+ G+ S    +  +  P+  + PST W  L    GT
Sbjct: 859 RVPCTAGTYSLEGVAACVDCPVGYMCPSTSWQPLRCPFGT 898


>SB_47814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1492

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 460 VHVKLTQNGLSAAIEDKNNRFMFIALKDAMEGESRYDLLRRH 585
           +H+ LT+ G     E    R  F+AL+      S Y+L R H
Sbjct: 4   LHIVLTKGGQKLFFEQPIRRSRFVALRQCSLFNSWYNLEREH 45


>SB_27611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 328 EDFSRKNNEGDISIPYLYDNLSDALYLPSVEDASRVLE 441
           +DF+   ++G++S+P   +  S+      VE +SRV E
Sbjct: 88  KDFASSGDQGEVSVPRRENEASEGEKRKEVESSSRVEE 125


>SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)
          Length = 1223

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -3

Query: 182  HKNTGTVDALATLRTSNGNSKRQNAIFV-LH*WTLVD 75
            H     +D L TLRTSNG       +F     WTL++
Sbjct: 922  HNGENLIDGLYTLRTSNGEEFLTYCLFTSAVVWTLIE 958


>SB_13699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 474 HPKRTLCSH*R*K*QVYVHRLEGCYGRRVTLRPPPA 581
           H  RT+C+H   +   Y HR+   +   +TL  P A
Sbjct: 254 HTTRTVCAHYTPRTSHYTHRMRTLHATYITLHAPYA 289


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,943,153
Number of Sequences: 59808
Number of extensions: 367074
Number of successful extensions: 857
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)