Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11h21r
(699 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 355 3e-99
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 68 1e-12
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 54 3e-08
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 32 0.069
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma... 30 0.28
SPBC1709.09 |||mitochondrial translation termination factor|Schi... 29 0.85
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 26 4.5
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb... 25 7.9
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51... 25 7.9
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 355 bits (873), Expect = 3e-99
Identities = 172/215 (80%), Positives = 193/215 (89%)
Frame = -1
Query: 699 FTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDP 520
FTQAGSEVSALLGRIPSAVGYQPTLATDMG MQERITTTKKGSITSVQA+YVPADDLTDP
Sbjct: 307 FTQAGSEVSALLGRIPSAVGYQPTLATDMGAMQERITTTKKGSITSVQAVYVPADDLTDP 366
Query: 519 APATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNVARGVQKILQD 340
APATTFAHLDATTVLSR+I+ELGIYPAVDPLDS SR+MDP I+G EHYN+A VQ++LQ+
Sbjct: 367 APATTFAHLDATTVLSRSISELGIYPAVDPLDSKSRMMDPRILGEEHYNLAGSVQQMLQE 426
Query: 339 YKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKG 160
YKSLQDIIAILGMDELSE DKLTV RARK+QRFLSQPF VAEVFTG G+LV L++TI+
Sbjct: 427 YKSLQDIIAILGMDELSEADKLTVERARKVQRFLSQPFAVAEVFTGIEGRLVSLKDTIRS 486
Query: 159 FSKILAGDYDHLPEVAFYMVGPIEEVVAKADTLAK 55
F +IL G +D LPE AFYMVG I++ V KA+ +A+
Sbjct: 487 FKEILEGKHDSLPESAFYMVGSIDDAVKKAEKIAQ 521
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 67.7 bits (158), Expect = 1e-12
Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 7/163 (4%)
Frame = -1
Query: 699 FTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLT 526
+ A EVSA +P GY + TD+ T+ ER + GSIT + + +P DD+T
Sbjct: 281 YADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVEGRNGSITQIPILTMPNDDIT 340
Query: 525 DPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----IGAEHYNVARGV 358
P P T + + R + IYP ++ L S SR+M I +H +V+ +
Sbjct: 341 HPIPDLTGYITEGQIFVDRQLHNNAIYPPINVLPSLSRLMKSAIGEGMTRNDHGDVSNQL 400
Query: 357 QKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 232
+ + + +++G + LS+ED+L + K ++ F+SQ
Sbjct: 401 YAMYAIGRDAASMKSVVGEEALSQEDRLALEFLGKFEKTFISQ 443
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 53.6 bits (123), Expect = 3e-08
Identities = 43/169 (25%), Positives = 82/169 (48%), Gaps = 13/169 (7%)
Frame = -1
Query: 699 FTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI-------TTTKKGSITSVQAIYVP 541
+ +A E+S L +P+ GY L + + ER + ++G+++ V A+ P
Sbjct: 362 WAEALREISGRLAEMPADSGYPAYLGAKLASFYERAGRARCLGSPDREGTVSIVGAVSPP 421
Query: 540 ADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEH----YN 373
D +DP + T + L + +A+ +P+++ S S+ ++ E +N
Sbjct: 422 GGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINTSLSYSKYINALQPWYEERVPGFN 481
Query: 372 VARG-VQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 232
R +++I+Q S+ +II ++G LSE DK+T+ A I+ FL Q
Sbjct: 482 TLRDQIKQIIQQEDSMLEIIQLVGKSALSETDKVTLDIAGIIKNDFLQQ 530
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 32.3 bits (70), Expect = 0.069
Identities = 29/116 (25%), Positives = 48/116 (41%)
Frame = -1
Query: 576 GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPN 397
GS+T++ I D++ P + D L + GI PA++ S SR+
Sbjct: 347 GSLTALPVIETQGGDVSAYIPTNVISITDGQIFLESELFFKGIRPAINVGLSVSRVGSAA 406
Query: 396 IIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQP 229
+ A VA ++ L Y+ + A G D L + T+ R ++ L QP
Sbjct: 407 QVKAMK-QVAGQIKLFLAQYREVAS-FAQFGSD-LDAGTRATLDRGLRLTELLKQP 459
>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 30.3 bits (65), Expect = 0.28
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = -1
Query: 561 VQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPA--VDPLDSTSRIMDPNIIG 388
+ I VP D P F + SR +A G P+ V+P +S ++I+D I
Sbjct: 91 IAIIGVPFDTAVSHRPGARFGPKGIRSASSRQMAIRGFNPSLNVNPYESWAKILDCGDIP 150
Query: 387 AEHYNVARGVQKILQDYKSL 328
Y+ V+++ + Y L
Sbjct: 151 VSSYDNQLAVRQMTEGYIDL 170
>SPBC1709.09 |||mitochondrial translation termination
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 28.7 bits (61), Expect = 0.85
Identities = 9/41 (21%), Positives = 22/41 (53%)
Frame = -1
Query: 603 QERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATT 481
QE + +G+ T ++A+++P+ + P P+ + A +
Sbjct: 78 QEAVVLPSQGNFTQLEALFIPSKSIKAPTPSRLLREIAAVS 118
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 585 TKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGI 448
TK G++ + V + DPA A +L+ +V RA A LG+
Sbjct: 439 TKAGALLGIGVTNVAVRNEADPAMAILSEYLETGSVKLRASAILGL 484
>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 415
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/54 (18%), Positives = 28/54 (51%)
Frame = +1
Query: 493 QVSKSGSWSRICQVISWYINSLYRCDGTFLGGGNSFLHSTHVSSQSRLISYSRW 654
++S++ S+ ++++ Y+ + D F+G SF+ +T +++ + W
Sbjct: 302 RISRADSYDHDIRMLAKYLQEVTLMDEIFIGAHISFIAATAYYLSMQMLGHLDW 355
>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 176 SSGTSLPACPVNTSATWKGCERNL*ILRARATVNLSSSDNSS 301
S G P+ S CE N +R R T ++ SSD S+
Sbjct: 130 SGGIQYSNVPLINSRVTPNCESNCSNIRRRLTAHIISSDAST 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,993,730
Number of Sequences: 5004
Number of extensions: 64950
Number of successful extensions: 191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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