Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11h21r
(699 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 356 7e-99
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 356 7e-99
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 356 7e-99
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 70 1e-12
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 70 1e-12
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 69 2e-12
At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit... 61 6e-10
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 58 6e-09
At3g50150.1 68416.m05482 expressed protein contains Pfam profile... 33 0.18
At2g24820.1 68415.m02969 Rieske [2Fe-2S] domain-containing prote... 31 0.97
At2g47430.1 68415.m05920 cytokinin-responsive histidine kinase (... 30 1.3
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 29 3.0
At3g11560.3 68416.m01412 expressed protein 28 5.2
At3g11560.2 68416.m01411 expressed protein 28 5.2
At3g11560.1 68416.m01410 expressed protein 28 5.2
At2g44620.1 68415.m05554 acyl carrier protein, mitochondrial / A... 28 5.2
At5g58300.1 68418.m07298 leucine-rich repeat transmembrane prote... 28 6.8
At1g78640.1 68414.m09165 expressed protein ; expression supporte... 27 9.0
At1g72440.1 68414.m08377 CCAAT-box-binding transcription factor-... 27 9.0
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 356 bits (876), Expect = 7e-99
Identities = 173/217 (79%), Positives = 193/217 (88%)
Frame = -1
Query: 699 FTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDP 520
FTQA SEVSALLGRIPSAVGYQPTLA+D+G +QERITTTKKGSITSVQAIYVPADDLTDP
Sbjct: 338 FTQANSEVSALLGRIPSAVGYQPTLASDLGALQERITTTKKGSITSVQAIYVPADDLTDP 397
Query: 519 APATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNVARGVQKILQD 340
APATTFAHLDATTVLSR I+ELGIYPAVDPLDSTSR++ P+I+G EHYN ARGVQK+LQ+
Sbjct: 398 APATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQN 457
Query: 339 YKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKG 160
YK+LQDIIAILGMDELSE+DKLTVARARKIQRFLSQPF VAE+FTG GK V L+E I
Sbjct: 458 YKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEIFTGAPGKYVDLKENINS 517
Query: 159 FSKILAGDYDHLPEVAFYMVGPIEEVVAKADTLAKNA 49
F +L G YD L E +FYMVG I+EVVAKA+ +AK +
Sbjct: 518 FQGLLDGKYDDLSEQSFYMVGGIDEVVAKAEKIAKES 554
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 356 bits (876), Expect = 7e-99
Identities = 173/217 (79%), Positives = 193/217 (88%)
Frame = -1
Query: 699 FTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDP 520
FTQA SEVSALLGRIPSAVGYQPTLA+D+G +QERITTTKKGSITSVQAIYVPADDLTDP
Sbjct: 341 FTQANSEVSALLGRIPSAVGYQPTLASDLGALQERITTTKKGSITSVQAIYVPADDLTDP 400
Query: 519 APATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNVARGVQKILQD 340
APATTFAHLDATTVLSR I+ELGIYPAVDPLDSTSR++ P+I+G EHYN ARGVQK+LQ+
Sbjct: 401 APATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQN 460
Query: 339 YKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKG 160
YK+LQDIIAILGMDELSE+DKLTVARARKIQRFLSQPF VAE+FTG GK V L+E I
Sbjct: 461 YKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEIFTGAPGKYVDLKENINS 520
Query: 159 FSKILAGDYDHLPEVAFYMVGPIEEVVAKADTLAKNA 49
F +L G YD L E +FYMVG I+EVVAKA+ +AK +
Sbjct: 521 FQGLLDGKYDDLSEQSFYMVGGIDEVVAKAEKIAKES 557
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 356 bits (876), Expect = 7e-99
Identities = 173/217 (79%), Positives = 193/217 (88%)
Frame = -1
Query: 699 FTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDP 520
FTQA SEVSALLGRIPSAVGYQPTLA+D+G +QERITTTKKGSITSVQAIYVPADDLTDP
Sbjct: 338 FTQANSEVSALLGRIPSAVGYQPTLASDLGALQERITTTKKGSITSVQAIYVPADDLTDP 397
Query: 519 APATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNVARGVQKILQD 340
APATTFAHLDATTVLSR I+ELGIYPAVDPLDSTSR++ P+I+G EHYN ARGVQK+LQ+
Sbjct: 398 APATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQN 457
Query: 339 YKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKG 160
YK+LQDIIAILGMDELSE+DKLTVARARKIQRFLSQPF VAE+FTG GK V L+E I
Sbjct: 458 YKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEIFTGAPGKYVDLKENINS 517
Query: 159 FSKILAGDYDHLPEVAFYMVGPIEEVVAKADTLAKNA 49
F +L G YD L E +FYMVG I+EVVAKA+ +AK +
Sbjct: 518 FQGLLDGKYDDLSEQSFYMVGGIDEVVAKAEKIAKES 554
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 70.1 bits (164), Expect = 1e-12
Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 7/163 (4%)
Frame = -1
Query: 699 FTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLT 526
+ A EVSA +P GY + TD+ T+ ER +KGSIT + + +P DD+T
Sbjct: 280 YADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDIT 339
Query: 525 DPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----IGAEHYNVARGV 358
P P T + + R + IYP ++ L S SR+M I +H +V+ +
Sbjct: 340 HPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQL 399
Query: 357 QKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 232
K +Q + A++G + LS ED L + K +R F++Q
Sbjct: 400 YANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQ 442
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 70.1 bits (164), Expect = 1e-12
Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 7/163 (4%)
Frame = -1
Query: 699 FTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLT 526
+ A EVSA +P GY + TD+ T+ ER +KGSIT + + +P DD+T
Sbjct: 280 YADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDIT 339
Query: 525 DPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----IGAEHYNVARGV 358
P P T + + R + IYP ++ L S SR+M I +H +V+ +
Sbjct: 340 HPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQL 399
Query: 357 QKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 232
K +Q + A++G + LS ED L + K +R F++Q
Sbjct: 400 YANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQ 442
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 69.3 bits (162), Expect = 2e-12
Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 6/158 (3%)
Frame = -1
Query: 699 FTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLT 526
+ A EVSA +P GY + TD+ T+ ER +KGSIT + + +P DD+T
Sbjct: 279 YADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDIT 338
Query: 525 DPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----IGAEHYNVARGV 358
P P T + + R + IYP ++ L S SR+M I +H +V+ +
Sbjct: 339 HPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQL 398
Query: 357 QKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR 244
K +Q + A++G + LS ED L + K +R
Sbjct: 399 YANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFER 436
>At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit A
/ V-ATPase A subunit / vacuolar proton pump alpha
subunit / V-ATPase 69 kDa subunit identical to SP|O23654
Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14)
(V-ATPase A subunit) (Vacuolar proton pump alpha
subunit) (V-ATPase 69 kDa subunit) {Arabidopsis
thaliana}
Length = 623
Score = 61.3 bits (142), Expect = 6e-10
Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 13/169 (7%)
Frame = -1
Query: 699 FTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK-------KGSITSVQAIYVP 541
+ +A E+S L +P+ GY LA + + ER K GS+T V A+ P
Sbjct: 357 WAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERNGSVTIVGAVSPP 416
Query: 540 ADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDP-----NIIGAEHY 376
D +DP + T + + L + +A+ +P+V+ L S S+ +
Sbjct: 417 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEKFDPDFI 476
Query: 375 NVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 232
N+ +++LQ L +I+ ++G D L+E DK+T+ A+ ++ +L+Q
Sbjct: 477 NIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQ 525
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 58.0 bits (134), Expect = 6e-09
Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 6/132 (4%)
Frame = -1
Query: 621 TDMGTMQERITTT--KKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGI 448
TD+ T+ ER +KGSIT + + +P DD+T P P T + + R + I
Sbjct: 304 TDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQI 363
Query: 447 YPAVDPLDSTSRIMDPNI----IGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEED 280
YP ++ L S SR+M I +H +V+ + K +Q + A++G + LS ED
Sbjct: 364 YPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSED 423
Query: 279 KLTVARARKIQR 244
L + K +R
Sbjct: 424 LLYLEFLDKFER 435
>At3g50150.1 68416.m05482 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function; expression
supported by MPSS
Length = 509
Score = 33.1 bits (72), Expect = 0.18
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 277 LVFFRQLVHTQNSNNVLQGFVVLKNFLNSTCNIVVLSSNNIGVHDTGS 420
L+ F Q HTQ+SNN+ + + N +NS+ ++ L + I H GS
Sbjct: 377 LIAFEQC-HTQSSNNITSYIIFMDNLINSSQDVSYLHHDGIIEHWLGS 423
>At2g24820.1 68415.m02969 Rieske [2Fe-2S] domain-containing protein
similar to Rieske iron-sulfur protein Tic55 from Pisum
sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 539
Score = 30.7 bits (66), Expect = 0.97
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +1
Query: 283 FFRQLVHTQNSNNVLQGFVVLKNFLNST 366
+FR ++H ++ +NV++ F + KN L++T
Sbjct: 460 YFRHIIHCRSCSNVIKSFELWKNILSAT 487
>At2g47430.1 68415.m05920 cytokinin-responsive histidine kinase (CKI1)
identical to GB:D87545
Length = 1122
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = -1
Query: 492 DATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNVARGVQKILQDYKSLQDIIA 313
+A +++ + + +VD L MD + + Y R ++K+ + Y IIA
Sbjct: 1021 EALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIA 1080
Query: 312 ILGMDELSEEDKLTV 268
+ G D SEE + T+
Sbjct: 1081 VSGHDPGSEEARETI 1095
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = -1
Query: 600 ERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDS 421
+R T GS+T++ I A D++ P + D L + GI PA++ S
Sbjct: 584 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLS 643
Query: 420 TSRI 409
SR+
Sbjct: 644 VSRV 647
>At3g11560.3 68416.m01412 expressed protein
Length = 872
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 152 LENPLIVSSSGTSLPACPVNTSATWKGCERNL 247
L+ P +VSSS TS P P + T+ C+R +
Sbjct: 5 LQRPGLVSSSSTSKPCLPRMSIVTFISCKRTV 36
>At3g11560.2 68416.m01411 expressed protein
Length = 872
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 152 LENPLIVSSSGTSLPACPVNTSATWKGCERNL 247
L+ P +VSSS TS P P + T+ C+R +
Sbjct: 5 LQRPGLVSSSSTSKPCLPRMSIVTFISCKRTV 36
>At3g11560.1 68416.m01410 expressed protein
Length = 619
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 152 LENPLIVSSSGTSLPACPVNTSATWKGCERNL 247
L+ P +VSSS TS P P + T+ C+R +
Sbjct: 5 LQRPGLVSSSSTSKPCLPRMSIVTFISCKRTV 36
>At2g44620.1 68415.m05554 acyl carrier protein, mitochondrial / ACP
/ NADH-ubiquinone oxidoreductase 9.6 kDa subunit
identical to SP|P53665 Acyl carrier protein,
mitochondrial precursor (ACP) (NADH-ubiquinone
oxidoreductase 9.6 kDa subunit) (MtACP-1) {Arabidopsis
thaliana}; identical to cDNA acyl carrier protein
precursor GI:468265
Length = 122
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = -1
Query: 498 HLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNVARGVQKILQDYK 334
HL V+ R + + +P VDP T + N +G + + V I +++K
Sbjct: 40 HLSREAVVDRVLDVVKSFPKVDPSKVTPEVHFQNDLGLDSLDTVEIVMAIEEEFK 94
>At5g58300.1 68418.m07298 leucine-rich repeat transmembrane protein
kinase, putative
Length = 654
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 594 ITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLS 472
+T T G TSV A+ +P L P P T L++ +LS
Sbjct: 80 VTCTSDG--TSVHALRLPGIGLLGPIPPNTLGKLESLRILS 118
>At1g78640.1 68414.m09165 expressed protein ; expression supported
by MPSS
Length = 487
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 315 AILGMDELSEEDKLTVARARKIQRFLSQPFQ 223
A +G EL E DK+ + A+K Q F+SQ Q
Sbjct: 237 AFVGRRELKEGDKIGLFWAKKSQTFMSQEQQ 267
>At1g72440.1 68414.m08377 CCAAT-box-binding transcription
factor-related similar to CCAAT-box-binding
transcription factor (CCAAT-binding factor) (CBF)
(Swiss-Prot:Q03701) [Homo sapiens], GB:P53569 [Mus
musculus]
Length = 1056
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2
Query: 323 TLLLFWVWTSCLKK 282
+LLLFW W CLK+
Sbjct: 303 SLLLFWYWEDCLKQ 316
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,694,072
Number of Sequences: 28952
Number of extensions: 346159
Number of successful extensions: 876
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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