Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11h21f
(602 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 175 2e-44
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 175 2e-44
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 175 2e-44
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 58 4e-09
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 44 8e-05
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 44 8e-05
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 44 1e-04
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 44 1e-04
At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati... 44 1e-04
At3g54040.1 68416.m05975 photoassimilate-responsive protein-rela... 31 0.59
At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN ... 30 1.4
At4g34340.1 68417.m04880 expressed protein 29 2.4
At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains... 27 7.2
At3g62640.1 68416.m07036 expressed protein 27 7.2
At3g52640.1 68416.m05799 nicastrin-related contains weak similar... 27 7.2
At2g33640.1 68415.m04124 zinc finger (DHHC type) family protein ... 27 7.2
At1g28380.1 68414.m03487 expressed protein 27 7.2
At5g39880.1 68418.m04837 expressed protein 27 9.6
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 175 bits (426), Expect = 2e-44
Identities = 85/127 (66%), Positives = 102/127 (80%), Gaps = 2/127 (1%)
Frame = +3
Query: 225 DVQFEDN--LPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSG 398
DV+FED LPPI+ +LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G
Sbjct: 95 DVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTG 154
Query: 399 SPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKV 578
+PI +PVG TLGRI+NV+GEPIDERG I T+ IH +AP VD++ QEIL TGIKV
Sbjct: 155 APITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKV 214
Query: 579 VDLLAPY 599
VDLLAPY
Sbjct: 215 VDLLAPY 221
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 175 bits (426), Expect = 2e-44
Identities = 85/127 (66%), Positives = 102/127 (80%), Gaps = 2/127 (1%)
Frame = +3
Query: 225 DVQFEDN--LPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSG 398
DV+FED LPPI+ +LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G
Sbjct: 98 DVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTG 157
Query: 399 SPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKV 578
+PI +PVG TLGRI+NV+GEPIDERG I T+ IH +AP VD++ QEIL TGIKV
Sbjct: 158 APITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKV 217
Query: 579 VDLLAPY 599
VDLLAPY
Sbjct: 218 VDLLAPY 224
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 175 bits (426), Expect = 2e-44
Identities = 85/127 (66%), Positives = 102/127 (80%), Gaps = 2/127 (1%)
Frame = +3
Query: 225 DVQFEDN--LPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSG 398
DV+FED LPPI+ +LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G
Sbjct: 95 DVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTG 154
Query: 399 SPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKV 578
+PI +PVG TLGRI+NV+GEPIDERG I T+ IH +AP VD++ QEIL TGIKV
Sbjct: 155 APITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKV 214
Query: 579 VDLLAPY 599
VDLLAPY
Sbjct: 215 VDLLAPY 221
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 58.0 bits (134), Expect = 4e-09
Identities = 28/97 (28%), Positives = 48/97 (49%)
Frame = +3
Query: 306 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 485
+A +L V + G + G V +GS + +P G LGR+++ +G PID +G +
Sbjct: 334 MALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGKGAL 393
Query: 486 PTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAP 596
+ + +AP ++ E + TG+K VD L P
Sbjct: 394 SDHEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVP 430
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 44.0 bits (99), Expect = 8e-05
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Frame = +3
Query: 321 GENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 497
GE V + +GT G+ + +G ++ PV + LGRI N G+PID PI +
Sbjct: 64 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 122
Query: 498 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLL 590
I + + + +E++ TGI +D++
Sbjct: 123 YLDISGSSINPSERTYPEEMIQTGISTIDVM 153
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 44.0 bits (99), Expect = 8e-05
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Frame = +3
Query: 321 GENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 497
GE V + +GT G+ + +G ++ PV + LGRI N G+PID PI +
Sbjct: 64 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 122
Query: 498 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLL 590
I + + + +E++ TGI +D++
Sbjct: 123 YLDISGSSINPSERTYPEEMIQTGISTIDVM 153
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Frame = +3
Query: 321 GENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 497
GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI +
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 121
Query: 498 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLL 590
I + + + +E++ TGI +D++
Sbjct: 122 YLDISGSSINPSERTYPEEMIQTGISTIDVM 152
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Frame = +3
Query: 321 GENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 497
GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI +
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 121
Query: 498 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLL 590
I + + + +E++ TGI +D++
Sbjct: 122 YLDISGSSINPSERTYPEEMIQTGISTIDVM 152
>At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 330
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Frame = +3
Query: 321 GENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 497
GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI +
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 121
Query: 498 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLL 590
I + + + +E++ TGI +D++
Sbjct: 122 YLDISGSSINPSERTYPEEMIQTGISTIDVM 152
>At3g54040.1 68416.m05975 photoassimilate-responsive protein-related
contains weak similarity to mRNA inducible by sucrose
and salicylic acid expressed in sugar-accumulating
tobacco plants (GI:871487) [Nicotiana tabacum]
Length = 183
Score = 31.1 bits (67), Expect = 0.59
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +3
Query: 240 DNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLV 371
+NLP + + + R +LE A GE T RT A+D EG+V
Sbjct: 29 ENLPTNMCSFSISASGKRCILETANVAGEFTCRTSAVD-VEGIV 71
>At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN
protein (ETT) identical to ETTIN GB:AF007788 from
[Arabidopsis thaliana]
Length = 608
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 330 CSHPNVGLPQVRGGEIDFAPQGHLESEAGY-LRIAHLPQH 214
C+ P + LP+ RG + + PQGHLE + I LP H
Sbjct: 59 CAGPLISLPK-RGSLVLYFPQGHLEQAPDFSAAIYGLPPH 97
>At4g34340.1 68417.m04880 expressed protein
Length = 353
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 485 DGTTLVNRFADYIDDATEGFSSHRDTNW 402
DG +++ FA ++ A +GFSS T W
Sbjct: 259 DGLSVIEAFAPAMEAARDGFSSEAHTEW 286
>At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains
Pfam profile: PF02362 B3 DNA binding domain; identical
to cDNA auxin response factor 4 (ARF4) GI:4102597
Length = 788
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 330 CSHPNVGLPQVRGGEIDFAPQGHLESEA 247
C+ P LP+ +G + + PQGHLE +A
Sbjct: 70 CAGPLTCLPK-KGNVVVYFPQGHLEQDA 96
>At3g62640.1 68416.m07036 expressed protein
Length = 110
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/65 (24%), Positives = 27/65 (41%)
Frame = -2
Query: 430 VSAPTGIRIGEPESSTGCPRTKPSVPSMAMVRTVFSPKCWATSSTRRGDRFCTSRAFRIG 251
V T + P+S P P S + RT +P + T+R R T + + +
Sbjct: 27 VGGTTQVYSTRPDSPKFQPSIPPPPGSTSKTRTTATPWRLIDAETKRKKRIATYKTYALE 86
Query: 250 GRLSS 236
G++ S
Sbjct: 87 GKVKS 91
>At3g52640.1 68416.m05799 nicastrin-related contains weak similarity
to Nicastrin precursor (Swiss-Prot:Q92542) [Homo
sapiens]
Length = 676
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -1
Query: 584 IDDFYTSYENLLLHRHVDKLWSFSMNSSSLV 492
++DF T++ N H H+D L ++NSSS+V
Sbjct: 421 LEDFDTNFVNKFYHSHLDDL--SNINSSSVV 449
>At2g33640.1 68415.m04124 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 565
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 438 DRGFQLP-PGYELVSQSLVRVAHGLSLQYRPWQWSELCSHPNVGLPQ 301
D+ Q P P V+ + R + GLS+QYR + LC+ PN+ + Q
Sbjct: 295 DQTSQYPSPASSAVTATSARSSLGLSIQYR---GASLCTPPNIFVDQ 338
>At1g28380.1 68414.m03487 expressed protein
Length = 612
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -2
Query: 565 VTRISCCTDMSTN---SGASA*IAAVLSVGMGPRSSIGSP 455
VTR SC ++STN SG + I+ LS G+ P + P
Sbjct: 498 VTRKSCWDNLSTNSRKSGVFSMISTRLSTGLSPNPATTKP 537
>At5g39880.1 68418.m04837 expressed protein
Length = 363
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 133 LQSMPLTRGTMLLNLQEKAKVRLLPLSVLW*MCNSKITCL 252
LQ++P T T +LN +E++ + ++ MC +T L
Sbjct: 44 LQTLPFTEITEILNRKERSAPKTPEFKAMFTMCKGYVTYL 83
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,338,754
Number of Sequences: 28952
Number of extensions: 280300
Number of successful extensions: 754
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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