Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h20r
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75530-2|CAA99795.2|  351|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z70312-6|CAA94387.1|  807|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z70309-14|CAA94363.1|  807|Caenorhabditis elegans Hypothetical p...    29   3.4  
U00048-6|AAB53828.1|  873|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AY099352-1|AAM34494.1|  891|Caenorhabditis elegans gamma-tubulin...    28   7.9  
AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin...    28   7.9  
AF040644-1|AAB94969.2|  891|Caenorhabditis elegans Gamma-tubulin...    28   7.9  

>Z75530-2|CAA99795.2|  351|Caenorhabditis elegans Hypothetical
           protein C47E8.4 protein.
          Length = 351

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -1

Query: 611 HRKLLNIFNYDDFLWNLCRSINKRKKECTKDKLLTRNNISCVNKLLVLHYYY 456
           HRK + I   +     L R+I   KKE T+ K  T  N+  V + L++ ++Y
Sbjct: 219 HRKNMKIKKGNTISQCLGRAIEALKKEFTELKSCTAENLMFVKEDLIIPHFY 270


>Z70312-6|CAA94387.1|  807|Caenorhabditis elegans Hypothetical
           protein ZC168.1 protein.
          Length = 807

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/37 (43%), Positives = 27/37 (72%), Gaps = 2/37 (5%)
 Frame = -2

Query: 451 LHRGIS-KHINNSHYR*LEIRFV-LKIQDNEEEKKVC 347
           LH+ IS + IN +++R  ++ +V LKIQD +E+ K+C
Sbjct: 411 LHKTISIQLINAANWRPNDVFYVHLKIQDVDEDSKIC 447


>Z70309-14|CAA94363.1|  807|Caenorhabditis elegans Hypothetical
           protein ZC168.1 protein.
          Length = 807

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/37 (43%), Positives = 27/37 (72%), Gaps = 2/37 (5%)
 Frame = -2

Query: 451 LHRGIS-KHINNSHYR*LEIRFV-LKIQDNEEEKKVC 347
           LH+ IS + IN +++R  ++ +V LKIQD +E+ K+C
Sbjct: 411 LHKTISIQLINAANWRPNDVFYVHLKIQDVDEDSKIC 447


>U00048-6|AAB53828.1|  873|Caenorhabditis elegans Hypothetical
           protein C05D11.8 protein.
          Length = 873

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
 Frame = -1

Query: 620 VLVHRKLLNI-------FNYDDFLWNLCRSINKRKKECTKDKLLTRNNI--SCVNKLLVL 468
           +LVH+ +LN        F   D  W + +S NK+  E  K  +L  N I    V    +L
Sbjct: 136 LLVHKPILNPLFRLCEWFQRADIYWRVSKSENKKTSEAEKMFVLLLNQICTKLVEDRTLL 195

Query: 467 HYYYIS 450
           H+++ S
Sbjct: 196 HFFFHS 201


>AY099352-1|AAM34494.1|  891|Caenorhabditis elegans gamma-tubulin
           ring protein GRIP-1 protein.
          Length = 891

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +2

Query: 521 LWCILFFVCLLNDINSRENHHN*RYLKVFYELRHNKIM*IKYINHIFKIESDTKVLLR 694
           +W I    C   D +S+      R+L   Y LR N    +  + H+F I + T + +R
Sbjct: 698 IWSIDLARCSTQDASSQNLPEIQRFLIKNYSLRENATCLLNMLAHVFSIINSTLLRVR 755


>AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin
           interacting proteinprotein 1, isoform b protein.
          Length = 963

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +2

Query: 521 LWCILFFVCLLNDINSRENHHN*RYLKVFYELRHNKIM*IKYINHIFKIESDTKVLLR 694
           +W I    C   D +S+      R+L   Y LR N    +  + H+F I + T + +R
Sbjct: 698 IWSIDLARCSTQDASSQNLPEIQRFLIKNYSLRENATCLLNMLAHVFSIINSTLLRVR 755


>AF040644-1|AAB94969.2|  891|Caenorhabditis elegans Gamma-tubulin
           interacting proteinprotein 1, isoform a protein.
          Length = 891

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +2

Query: 521 LWCILFFVCLLNDINSRENHHN*RYLKVFYELRHNKIM*IKYINHIFKIESDTKVLLR 694
           +W I    C   D +S+      R+L   Y LR N    +  + H+F I + T + +R
Sbjct: 698 IWSIDLARCSTQDASSQNLPEIQRFLIKNYSLRENATCLLNMLAHVFSIINSTLLRVR 755


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,973,736
Number of Sequences: 27780
Number of extensions: 277445
Number of successful extensions: 617
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)