Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h20f
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    23   2.6  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   3.4  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   7.9  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   7.9  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   7.9  

>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 336 PCDPSSWRIVARSPLRLR 389
           PCDP   R+ + +PL LR
Sbjct: 57  PCDPVGRRLKSLAPLVLR 74


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 460 SNRSNRDGQPVP*TLHRQAPSCIHRRRSG 374
           +N+SN +GQ +  +LH+  P+ +H  R G
Sbjct: 135 TNKSNGNGQIMLNSLHKYKPT-VHLVRVG 162


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 221 VSQSMEPSSTS-TTTVSIACPASPNI 295
           +S    PS+T+ TTT S A  ++P I
Sbjct: 2   ISSKFSPSTTTTTTTTSSALNSTPLI 27


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 221 VSQSMEPSSTS-TTTVSIACPASPNI 295
           +S    PS+T+ TTT S A  ++P I
Sbjct: 2   ISSKFSPSTTTTTTTTSSALNSTPLI 27


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -1

Query: 520 WLYRRLDFRTPCSEWRTC 467
           WLY      T C+ + TC
Sbjct: 101 WLYGIFGHETSCTRYWTC 118


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,366
Number of Sequences: 336
Number of extensions: 3357
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)