Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11h20f
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 51 5e-07
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 48 4e-06
At4g36860.1 68417.m05226 LIM domain-containing protein low simil... 48 6e-06
At5g66610.1 68418.m08396 LIM domain-containing protein contains ... 47 8e-06
At5g66620.1 68418.m08397 LIM domain-containing protein contains ... 38 0.005
At1g31250.1 68414.m03825 proline-rich family protein contains pr... 34 0.083
At5g66630.1 68418.m08398 LIM domain-containing protein contains ... 33 0.11
At5g24740.1 68418.m02920 expressed protein 32 0.25
At2g37810.1 68415.m04642 CHP-rich zinc finger protein, putative 32 0.33
At1g53450.2 68414.m06059 expressed protein 30 1.0
At1g53450.1 68414.m06058 expressed protein 30 1.0
At1g10200.1 68414.m01150 transcription factor LIM, putative stro... 30 1.0
At5g60250.1 68418.m07552 zinc finger (C3HC4-type RING finger) fa... 29 1.8
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 29 1.8
At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger) fa... 29 1.8
At3g55770.1 68416.m06197 LIM domain-containing protein similar t... 29 3.1
At2g32450.1 68415.m03964 calcium-binding EF hand family protein ... 29 3.1
At1g75080.2 68414.m08720 brassinosteroid signalling positive reg... 29 3.1
At1g75080.1 68414.m08719 brassinosteroid signalling positive reg... 29 3.1
At4g11270.1 68417.m01823 transducin family protein / WD-40 repea... 28 4.1
At3g61360.1 68416.m06866 pentatricopeptide (PPR) repeat-containi... 28 4.1
At2g39900.1 68415.m04904 LIM domain-containing protein similar t... 28 4.1
At2g02700.1 68415.m00210 DC1 domain-containing protein contains ... 28 4.1
At1g16190.1 68414.m01939 DNA repair protein RAD23, putative simi... 28 4.1
At5g07350.1 68418.m00839 tudor domain-containing protein / nucle... 28 5.4
At2g39830.1 68415.m04892 LIM domain-containing protein contains ... 28 5.4
At1g79510.2 68414.m09269 expressed protein 28 5.4
At1g79510.1 68414.m09268 expressed protein 28 5.4
At5g58430.1 68418.m07317 exocyst subunit EXO70 family protein le... 27 7.2
At3g61230.1 68416.m06852 LIM domain-containing protein similar t... 27 7.2
At3g29375.1 68416.m03690 XH domain-containing protein contains P... 27 7.2
At3g19070.1 68416.m02422 cell wall protein-related similar to ve... 27 7.2
At5g55020.1 68418.m06853 myb family transcription factor (MYB120... 27 9.5
At5g52950.1 68418.m06570 expressed protein ; expression supporte... 27 9.5
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 27 9.5
At3g07430.1 68416.m00886 YGGT family protein contains Pfam profi... 27 9.5
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 51.2 bits (117), Expect = 5e-07
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +1
Query: 127 VCNSCDKVI-QGRIVTALNKKWHPEHFVCNTCRKPIDGAKFHQHNNGVHCVPCFTKHHSP 303
+C C+ I GR + LN WHPE F C C +PI +F N C+ + + P
Sbjct: 171 ICAGCNMEIGHGRFLNCLNSLWHPECFRCYGCSQPISEYEFSTSGNYPFHKACYRERYHP 230
Query: 304 RCHGCGDPITDRVIQALGVSWHAHHF 381
+C C I A + + AH F
Sbjct: 231 KCDVCSHFIPTN--HAGLIEYRAHPF 254
Score = 33.1 bits (72), Expect = 0.14
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 484 CKGCGNPIVDKAII-ALDAKWHRDCFTCMKCRNPVTD 591
C GC I + L++ WH +CF C C P+++
Sbjct: 172 CAGCNMEIGHGRFLNCLNSLWHPECFRCYGCSQPISE 208
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Frame = +1
Query: 307 CHGCGDPITD-RVIQALGVSWHAHHFVXXXXXXXXXXXXFMEQAGRPYCSDCYADKFATR 483
C GC I R + L WH F F P+ CY +++ +
Sbjct: 172 CAGCNMEIGHGRFLNCLNSLWHPECFRCYGCSQPISEYEFSTSGNYPFHKACYRERYHPK 231
Query: 484 CKGCGN 501
C C +
Sbjct: 232 CDVCSH 237
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 48.4 bits (110), Expect = 4e-06
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +1
Query: 130 CNSCDKVIQGRI-VTALNKKWHPEHFVCNTCRKPIDGAKFHQHNNGVHCVPCFTKHHSPR 306
C C I+ I + A WHP+ F C CR+PI + G++ PC+ + P
Sbjct: 1240 CKDCKSAIEDGISINAYGSVWHPQCFCCLRCREPIAMNEI-SDLRGMYHKPCYKELRHPN 1298
Query: 307 CHGCGDPITDRVIQALGVSWHAHHF 381
C+ C I A G+ +H H F
Sbjct: 1299 CYVCEKKIPR---TAEGLKYHEHPF 1320
Score = 39.9 bits (89), Expect = 0.001
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 478 TRCKGCGNPIVDK-AIIALDAKWHRDCFTCMKCRNPV 585
++CK C + I D +I A + WH CF C++CR P+
Sbjct: 1238 SKCKDCKSAIEDGISINAYGSVWHPQCFCCLRCREPI 1274
>At4g36860.1 68417.m05226 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 351
Score = 47.6 bits (108), Expect = 6e-06
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +1
Query: 187 WHPEHFVCNTCRKPIDGAKFHQHNNGVHCVPCFTKHHSPRCHGC 318
WHPE F CN C KPI +F N + C+ + H P+C C
Sbjct: 5 WHPECFCCNACDKPIIDYEFSMSGNRPYHKLCYKEQHHPKCDVC 48
Score = 28.7 bits (61), Expect = 3.1
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +1
Query: 541 WHRDCFTCMKCRNPVTD 591
WH +CF C C P+ D
Sbjct: 5 WHPECFCCNACDKPIID 21
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/50 (26%), Positives = 17/50 (34%)
Frame = +1
Query: 352 LGVSWHAHHFVXXXXXXXXXXXXFMEQAGRPYCSDCYADKFATRCKGCGN 501
+G WH F F RPY CY ++ +C C N
Sbjct: 1 MGGVWHPECFCCNACDKPIIDYEFSMSGNRPYHKLCYKEQHHPKCDVCHN 50
>At5g66610.1 68418.m08396 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 529
Score = 47.2 bits (107), Expect = 8e-06
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 124 AVCNSCDKVIQ-GRIVTALNKKWHPEHFVCNTCRKPIDGAKFHQHN--NGVHCVPCFTKH 294
++C+ C I+ GR V AL WHPE F C C KPI ++ +H +C P
Sbjct: 199 SICDGCKSAIEYGRSVHALGVNWHPECFCCRYCDKPIAMHEYKEHPFWKEKYC-PFHEVD 257
Query: 295 HSPRCHGC 318
+P+C C
Sbjct: 258 GTPKCCSC 265
Score = 35.5 bits (78), Expect = 0.027
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 484 CKGCGNPI-VDKAIIALDAKWHRDCFTCMKCRNPV 585
C GC + I +++ AL WH +CF C C P+
Sbjct: 201 CDGCKSAIEYGRSVHALGVNWHPECFCCRYCDKPI 235
Score = 33.5 bits (73), Expect = 0.11
Identities = 27/99 (27%), Positives = 35/99 (35%), Gaps = 5/99 (5%)
Frame = +1
Query: 292 HHSPRCHGCGDPIT-DRVIQALGVSWHAHHFVXXXXXXXXXXXXFMEQA--GRPYCSDCY 462
H C GC I R + ALGV+WH F + E YC
Sbjct: 196 HPHSICDGCKSAIEYGRSVHALGVNWHPECFCCRYCDKPIAMHEYKEHPFWKEKYCPFHE 255
Query: 463 ADKFATRCKGCG--NPIVDKAIIALDAKWHRDCFTCMKC 573
D +C C P K ++ D +W C CM+C
Sbjct: 256 VDG-TPKCCSCERLEPWGTKYVMLADNRWL--CVKCMEC 291
>At5g66620.1 68418.m08397 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 644
Score = 37.9 bits (84), Expect = 0.005
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 121 PAVCNSCDKVIQ-GRIVTALNKKWHPEHFVCNTCRKPI 231
P++C C+ ++ G V L WHP F C C KPI
Sbjct: 283 PSLCGGCNFAVEHGGSVNILGVLWHPGCFCCRACHKPI 320
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Frame = +1
Query: 484 CKGCGNPIVDKAII-ALDAKWHRDCFTCMKCRNPV 585
C GC + + L WH CF C C P+
Sbjct: 286 CGGCNFAVEHGGSVNILGVLWHPGCFCCRACHKPI 320
>At1g31250.1 68414.m03825 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
similar to prolin rich protein GB:S44189 GI:433706 from
[Zea mays]
Length = 165
Score = 33.9 bits (74), Expect = 0.083
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +2
Query: 179 TRNGIPSTLSATPAVSQSMEPSST--STTTVSIACP-ASPNITARGAMDAATPSLT 337
T N PS P S SM P+ T ++ +V + P ASP++ G A+PSLT
Sbjct: 89 TPNASPSVKLTPPYASPSMRPAGTPNASPSVKLTPPYASPSVRPTGTTPNASPSLT 144
>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
similarity to Pfam profile PF00412: LIM domain
Length = 702
Score = 33.5 bits (73), Expect = 0.11
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 124 AVCNSCDKVIQGR-IVTALNKKWHPEHFVCNTCRKPIDGAKFHQH 255
++C C+ ++ V L WHP F C +C KPI + H
Sbjct: 345 SMCGGCNSAVKHEESVNILGVLWHPGCFCCRSCDKPIAIHELENH 389
Score = 32.7 bits (71), Expect = 0.19
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 484 CKGCGNPIV-DKAIIALDAKWHRDCFTCMKCRNPV 585
C GC + + ++++ L WH CF C C P+
Sbjct: 347 CGGCNSAVKHEESVNILGVLWHPGCFCCRSCDKPI 381
>At5g24740.1 68418.m02920 expressed protein
Length = 3306
Score = 32.3 bits (70), Expect = 0.25
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -3
Query: 284 KQGTQWTPLLCWWNLAPSIGLRQVLQTKCSG 192
KQG P+ WN+ IGL V+ T CSG
Sbjct: 3193 KQGFLGVPIDLVWNIEREIGLESVIHTDCSG 3223
>At2g37810.1 68415.m04642 CHP-rich zinc finger protein, putative
Length = 233
Score = 31.9 bits (69), Expect = 0.33
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 13/69 (18%)
Frame = +1
Query: 130 CNSCDKVIQGRIVTA---LNKKWHPEH----FV------CNTCRKPIDGAKFHQHNNGVH 270
C CD V+ T L HP+H FV CN C + ++G +H G
Sbjct: 45 CAPCDYVLHDHCATCPFTLISFMHPQHELRLFVNGSENMCNICHRLVEGVYYHCETCGFD 104
Query: 271 CVPCFTKHH 297
P T+HH
Sbjct: 105 VHPLCTQHH 113
>At1g53450.2 68414.m06059 expressed protein
Length = 453
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -3
Query: 293 CLVKQGTQWTPLLCWWNLAPSIGLRQVLQTKCSG 192
C KQGT+ TP++ W + + ++G+ Q L + SG
Sbjct: 326 CKSKQGTRITPMINWPDKSLALGVSQALAWRRSG 359
>At1g53450.1 68414.m06058 expressed protein
Length = 453
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -3
Query: 293 CLVKQGTQWTPLLCWWNLAPSIGLRQVLQTKCSG 192
C KQGT+ TP++ W + + ++G+ Q L + SG
Sbjct: 326 CKSKQGTRITPMINWPDKSLALGVSQALAWRRSG 359
>At1g10200.1 68414.m01150 transcription factor LIM, putative strong
similarity to transcription factor Ntlim1 [Nicotiana
tabacum] GI:5689136, LIM domain protein WLIM-1
[Helianthus annuus] GI:5070280; contains Pfam profile
PF00412: LIM domain
Length = 190
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 130 CNSCDKVIQ-GRIVTALNKKWHPEHFVCNTCRKPIDGAKFHQHNNGVHCVPCFTKH 294
C +CDK + +TA N+ +H F C+ C+ + + ++ ++C P F ++
Sbjct: 10 CMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQN 65
>At5g60250.1 68418.m07552 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain
PF01485: IBR domain
Length = 655
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 484 CKGCGNPIVDKAIIALDAKWHRDCFTCMK 570
C C N IV + + ++D HR CF C+K
Sbjct: 301 CAICFNDIVAEGMFSVDKCRHRFCFQCVK 329
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 29.5 bits (63), Expect = 1.8
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 481 RCKGCGNPIVDKAIIALDAK-WHRDCFTCMKCRNPVTDS 594
+CK C + ++ L+ +H+ CF C C+ + S
Sbjct: 9 KCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVIS 47
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 130 CNSCDKVIQGR-IVTALNKKWHPEHFVCNTCRKPIDGAKFHQHNNGVHCVPCF 285
C +CDK + ++T +H F C C+ + + + + ++C P F
Sbjct: 10 CKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKPHF 62
>At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 401
Score = 29.5 bits (63), Expect = 1.8
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 179 TRNGIPSTLSATPAVSQSMEPSSTSTTTVSIACPASPN--ITARGAMDAATPSLTV*SK 349
TR PS+ S+TP+ S + S T T SPN I RG+ AA PS V S+
Sbjct: 58 TRFPPPSSSSSTPSASMHADNSPTPTIVTRTRSNRSPNPVIVLRGS--AAAPSSDVVSE 114
>At3g55770.1 68416.m06197 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 199
Score = 28.7 bits (61), Expect = 3.1
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 481 RCKGCGNPIVDKAIIALDAK-WHRDCFTCMKCRN 579
+CK C + +++ D +H+ CF C C++
Sbjct: 9 KCKACEKTVYAVELLSADGVGYHKSCFKCTHCKS 42
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 130 CNSCDKVIQG-RIVTALNKKWHPEHFVCNTCRKPIDGAKFHQHNNGVHCVPCF 285
C +C+K + +++A +H F C C+ + + + ++C P F
Sbjct: 10 CKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPHF 62
>At2g32450.1 68415.m03964 calcium-binding EF hand family protein low
similarity to O-linked GlcNAc transferase [Homo sapiens]
GI:2266994; contains Pfam profiles PF00036: EF hand,
PF00515: TPR Domain
Length = 802
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 205 VCNTCRKPIDGAKFHQHNNGVH-CVPCFTKHHSP 303
VC+ CR PI G++F + G C C+++ P
Sbjct: 730 VCSVCRYPIIGSRFKEVKTGFSLCNQCYSEGKIP 763
>At1g75080.2 68414.m08720 brassinosteroid signalling positive
regulator (BZR1) identical to to BZR1 protein
[Arabidopsis thaliana] gi|20270971|gb|AAM18490
Length = 336
Score = 28.7 bits (61), Expect = 3.1
Identities = 24/91 (26%), Positives = 41/91 (45%)
Frame = +2
Query: 29 VRGFQNNTTQHESKKI*KQSPAQSCQQRLKPPPSVTAATK*FKAES*RR*TRNGIPSTLS 208
+ G + T + S+ QSP S Q P V+ ++ F + S R N + ST
Sbjct: 98 IAGTSSRVTPYSSQN---QSPLSSAFQSPIPSYQVSPSSSSFPSPS-RGEPNNNMSSTFF 153
Query: 209 ATPAVSQSMEPSSTSTTTVSIACPASPNITA 301
P + PSS + +S +CP +P +++
Sbjct: 154 --PFLRNGGIPSSLPSLRISNSCPVTPPVSS 182
>At1g75080.1 68414.m08719 brassinosteroid signalling positive
regulator (BZR1) identical to to BZR1 protein
[Arabidopsis thaliana] gi|20270971|gb|AAM18490
Length = 336
Score = 28.7 bits (61), Expect = 3.1
Identities = 24/91 (26%), Positives = 41/91 (45%)
Frame = +2
Query: 29 VRGFQNNTTQHESKKI*KQSPAQSCQQRLKPPPSVTAATK*FKAES*RR*TRNGIPSTLS 208
+ G + T + S+ QSP S Q P V+ ++ F + S R N + ST
Sbjct: 98 IAGTSSRVTPYSSQN---QSPLSSAFQSPIPSYQVSPSSSSFPSPS-RGEPNNNMSSTFF 153
Query: 209 ATPAVSQSMEPSSTSTTTVSIACPASPNITA 301
P + PSS + +S +CP +P +++
Sbjct: 154 --PFLRNGGIPSSLPSLRISNSCPVTPPVSS 182
>At4g11270.1 68417.m01823 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to TGF-beta resistance-associated protein TRAG
(GI:15624071) {Mus musculus}; similar to
beta-transducin repeats containing protein - Homo
sapiens,PID:e1284220; 3' EST no_NP:TC8031
Length = 1446
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 293 CLVKQGTQWTPLLCWWNLAPSIGLRQVLQTKCSG 192
C V+Q +QW P + W+L G + LQ K G
Sbjct: 385 CDVEQPSQWRPHITIWSLCLGNGKEKELQRKVLG 418
>At3g61360.1 68416.m06866 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 498
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = -1
Query: 301 GCDVW*SRARNGHRCCAGGTWLHRLAYGRCCRQSARDAISCS 176
G D+W G+ C G L L C R+ A DA CS
Sbjct: 406 GLDLWKYMLEKGY--CPHGHALELLTTALCARRRANDAFECS 445
>At2g39900.1 68415.m04904 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 200
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 130 CNSCDKVIQG-RIVTALNKKWHPEHFVCNTCRKPIDGAKFHQHNNGVHCVPCF 285
C +C+K + +++A +H F C+ C+ + + + V+C P F
Sbjct: 10 CRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRPHF 62
Score = 27.9 bits (59), Expect = 5.4
Identities = 8/34 (23%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 481 RCKGCGNPIVDKAIIALDA-KWHRDCFTCMKCRN 579
+C+ C + +++ D +H+ CF C C++
Sbjct: 9 KCRACEKTVYPVELLSADGISYHKACFKCSHCKS 42
>At2g02700.1 68415.m00210 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 499
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +1
Query: 127 VCNSCDKVIQGRIVTALNKKWHPEHFVCNTCRKPIDGAKFHQHNNGVHCVPCFTK 291
VC CD ++ + A KK HP H PI+ H+ N+ C C K
Sbjct: 393 VCVKCDFILHEKCADAPRKKVHPLH------PHPIEQKVVHE-NHEFECAACMRK 440
>At1g16190.1 68414.m01939 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota]
Length = 368
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +2
Query: 206 SATPAVSQSMEPSSTSTTTVSIACPASPNITARGAMDAA 322
+A+ A S +P+ST+T+T+S A+P+ T A+ A+
Sbjct: 79 TASSAGPSSTQPTSTTTSTISSTTLAAPSTTQSIAVPAS 117
>At5g07350.1 68418.m00839 tudor domain-containing protein / nuclease
family protein contains Pfam domains PF00567: Tudor
domain and PF00565: Staphylococcal nuclease homologue
Length = 991
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = -1
Query: 499 FRTPCSEWRTCLHSNRSNRDGQP----VP*TLHRQAPSCIHRRRSGERATIRQE 350
F +P +E R CL S RS + G P P R+A + +R G++ ++ E
Sbjct: 402 FGSPAAERRVCLSSIRSPKMGNPRREEKPAPYAREAREFLRQRLIGKQVIVQME 455
>At2g39830.1 68415.m04892 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 503
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = +1
Query: 127 VCNSCDKVI-QGRIVTALNKKWHPEHFVCNTCRKPIDGAKFHQHNNGV---HCVPCFTKH 294
+C C+ I G + + +HPE F C++C I + ++ G+ C P + +
Sbjct: 161 ICGGCNSDIGSGNYLGCMGTFFHPECFRCHSCGYAITEHEIPTNDAGLIEYRCHPFWNQK 220
Query: 295 HSP 303
+ P
Sbjct: 221 YCP 223
>At1g79510.2 68414.m09269 expressed protein
Length = 275
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 245 STSTTTVSIACPASPNITAR-GAMDAATPS 331
+TS + ACPASPN T GAMD+ + S
Sbjct: 217 ATSVLDMVTACPASPNPTFMFGAMDSYSSS 246
>At1g79510.1 68414.m09268 expressed protein
Length = 275
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 245 STSTTTVSIACPASPNITAR-GAMDAATPS 331
+TS + ACPASPN T GAMD+ + S
Sbjct: 217 ATSVLDMVTACPASPNPTFMFGAMDSYSSS 246
>At5g58430.1 68418.m07317 exocyst subunit EXO70 family protein
leucine zipper-containing protein, Lycopersicon
esculentum, PIR:S21495; contains Pfam domain PF03081:
Exo70 exocyst complex subunit; similar to rexo70
(GI:2827160) {Rattus norvegicus}
Length = 624
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 3 VRDAPSDKTYADFKITQHNTKVKKYKNNHRHNHVNK 110
V+D D I +HN KVK+Y N++ + NK
Sbjct: 480 VKDGDLGLLLGDDWIRKHNVKVKQYHMNYQRSSWNK 515
>At3g61230.1 68416.m06852 LIM domain-containing protein similar to
SP|P29675 Pollen specific protein SF3 {Helianthus
annuus}; contains Pfam profile PF00412: LIM domain
Length = 213
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +1
Query: 481 RCKGCGNPIVDKAIIALDAK-WHRDCFTCMKC 573
+CK C + ++ L+ +H+ CF C C
Sbjct: 10 KCKACDKTVYVMDLMTLEGMPYHKSCFRCSHC 41
>At3g29375.1 68416.m03690 XH domain-containing protein contains Pfam
profile: PF03469: XH domain
Length = 335
Score = 27.5 bits (58), Expect = 7.2
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +2
Query: 191 IPSTLSATPAVSQSMEPSSTSTT-TVSIACPASPNI-TARGAMDAATPSLTV*SKLLAYR 364
I T SATP+ PSS ST + S+ +SP+I A G+ ++ PS A
Sbjct: 42 INPTSSATPSFEFGTVPSSPSTAPSTSLLFGSSPSIFGATGSSPSSLPS-------SAST 94
Query: 365 GTLTTSSAVDARRSLAVEGS 424
T TSS + SL V S
Sbjct: 95 TTHATSSVTTTQPSLGVASS 114
>At3g19070.1 68416.m02422 cell wall protein-related similar to
vegetative cell wall protein gp1 [Chlamydomonas
reinhardtii] gi|12018147|gb|AAG45420;
Length = 346
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 212 TPAVSQSMEPSSTSTTTVSIACPASPNITARGAMDAATPSL 334
T +VS S +PSS+ST S P+S + R + PSL
Sbjct: 150 TSSVSYSHQPSSSSTLATSSFFPSSMPYSVRPPDSSDRPSL 190
>At5g55020.1 68418.m06853 myb family transcription factor (MYB120)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 523
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 152 FKAES*RR*TRNGIPSTLSATPAVSQSMEPSSTSTTTVSIACPASPNITARGAMDAATP 328
F+ +S +R T + P S TPA ++S + TTT ++ P SP+ + ++TP
Sbjct: 177 FQPQSSQRNTPSSSPLP-SPTPANAKSSSSFTFHTTTANLLHPLSPHTPNTPSQLSSTP 234
>At5g52950.1 68418.m06570 expressed protein ; expression supported
by MPSS
Length = 945
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = -2
Query: 561 REAIAVPLSVKRDDGFIDDWISAPLAASGELVCIAIGAIGTASLFHEPSTAKL 403
RE + +S +G + I P S L+C+ + ++ HE S K+
Sbjct: 424 REGFSALVSFSNSNGSLRTGILKPFTFSSALICVFDNGVSPQTVDHEDSRKKV 476
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +2
Query: 218 AVSQSMEPSSTSTTTVSIACPASPNITARGAMDAATPSLTV*SKLLAYRGTLTTSSAVDA 397
A+S SS+S S + P SP++ + +LT+ S L TTS++
Sbjct: 2 AISAPAACSSSSRILCSYSSP-SPSLCPAISTSGKLKTLTLSSSFLPSYSLTTTSASQST 60
Query: 398 RRSLAVEGS 424
RRS V +
Sbjct: 61 RRSFTVRAA 69
>At3g07430.1 68416.m00886 YGGT family protein contains Pfam profile
PF02325: YGGT family (unknown function)
Length = 232
Score = 27.1 bits (57), Expect = 9.5
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +2
Query: 260 TVSIACPASPNITARGAMDAATPSLTV*SKLLAYRGTLTTSS-AVDARRSLAVEGSWNRL 436
++SI P S I+A A TP L K A TLT S+ ++ +LA+ + R+
Sbjct: 45 SLSIQNPKSIRISA-SASPITTPILQT-EKSTARSSTLTGSTRSLATLAALAI--AVTRV 100
Query: 437 AVPIAPIAMQTSSPLAARGAEIQSS 511
+A+QTSSP+ A G S
Sbjct: 101 LAQKLSLAIQTSSPVIADGLRFSLS 125
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,959,757
Number of Sequences: 28952
Number of extensions: 305138
Number of successful extensions: 1205
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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